PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s795882g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NF-YB
Protein Properties Length: 111aa    MW: 12428.8 Da    PI: 4.7268
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s795882g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB171.11.2e-5325111288
              NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 
                        reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+ea+dkcqrekrktingddllwa++tlGfedyveplkvyl+
  PDK_30s795882g001  25 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEAADKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLH 111
                        89***********************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.5E-5021111IPR009072Histone-fold
SuperFamilySSF471133.88E-3727111IPR009072Histone-fold
PfamPF008088.9E-293094IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.2E-185876No hitNo description
PRINTSPR006151.2E-187795No hitNo description
PRINTSPR006151.2E-1896111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MPDSDNESGG QNNSNNNAGE YSSPREQDRF LPIANVSRIM KKALPANAKI SKDAKETVQE  60
CVSEFISFIT GEAADKCQRE KRKTINGDDL LWAMTTLGFE DYVEPLKVYL H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A6e-4819111193NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0178301e-116BT017830.1 Zea mays clone EL01N0508H10.c mRNA sequence.
GenBankEU9563831e-116EU956383.1 Zea mays clone 1561739 nuclear transcription factor Y subunit B-3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008778301.13e-80nuclear transcription factor Y subunit B-3-like
RefseqXP_017702068.13e-80nuclear transcription factor Y subunit B-3-like
SwissprotQ75IZ72e-68NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8
TrEMBLA0A2H3X4U06e-79A0A2H3X4U0_PHODC; nuclear transcription factor Y subunit B-3-like
STRINGXP_008778301.11e-79(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.16e-62nuclear factor Y, subunit B3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]