PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s795882g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NF-YB | ||||||||
Protein Properties | Length: 111aa MW: 12428.8 Da PI: 4.7268 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 171.1 | 1.2e-53 | 25 | 111 | 2 | 88 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+ea+dkcqrekrktingddllwa++tlGfedyveplkvyl+ PDK_30s795882g001 25 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEAADKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLH 111 89***********************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 6.5E-50 | 21 | 111 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.88E-37 | 27 | 111 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.9E-29 | 30 | 94 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.2E-18 | 58 | 76 | No hit | No description |
PRINTS | PR00615 | 1.2E-18 | 77 | 95 | No hit | No description |
PRINTS | PR00615 | 1.2E-18 | 96 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
MPDSDNESGG QNNSNNNAGE YSSPREQDRF LPIANVSRIM KKALPANAKI SKDAKETVQE 60 CVSEFISFIT GEAADKCQRE KRKTINGDDL LWAMTTLGFE DYVEPLKVYL H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 6e-48 | 19 | 111 | 1 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT017830 | 1e-116 | BT017830.1 Zea mays clone EL01N0508H10.c mRNA sequence. | |||
GenBank | EU956383 | 1e-116 | EU956383.1 Zea mays clone 1561739 nuclear transcription factor Y subunit B-3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008778301.1 | 3e-80 | nuclear transcription factor Y subunit B-3-like | ||||
Refseq | XP_017702068.1 | 3e-80 | nuclear transcription factor Y subunit B-3-like | ||||
Swissprot | Q75IZ7 | 2e-68 | NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8 | ||||
TrEMBL | A0A2H3X4U0 | 6e-79 | A0A2H3X4U0_PHODC; nuclear transcription factor Y subunit B-3-like | ||||
STRING | XP_008778301.1 | 1e-79 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 6e-62 | nuclear factor Y, subunit B3 |
Publications ? help Back to Top | |||
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