PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s793471g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NAC | ||||||||
Protein Properties | Length: 236aa MW: 26642.6 Da PI: 5.5088 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 141.5 | 5.1e-44 | 5 | 134 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k...kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 ppG+rF Pt+eel+++yL++k+e+++ ++e+vi+ vd+y+++P++Lp + + + + ++w+fF++r++++a+g r++r+t sgyWkatg+ PDK_30s793471g001 5 PPGLRFYPTEEELLNFYLRNKLENTRQDMERVIPVVDVYSYDPEQLPpMsgeA-SIqDPEQWFFFCPRQEREAQGGRPTRTTPSGYWKATGS 95 8****************************99***************9644532.2224569******************************* PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 v+s+++ +g+kkt+vfy+grap+g+kt+W m+ey+ PDK_30s793471g001 96 PSFVFSSQNIRIGVKKTMVFYTGRAPTGTKTKWKMNEYK 134 **************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.06E-48 | 3 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.18 | 4 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-24 | 5 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MTSRPPGLRF YPTEEELLNF YLRNKLENTR QDMERVIPVV DVYSYDPEQL PPMSGEASIQ 60 DPEQWFFFCP RQEREAQGGR PTRTTPSGYW KATGSPSFVF SSQNIRIGVK KTMVFYTGRA 120 PTGTKTKWKM NEYKALEEAA ASTSSTPPKL RKEFSVCRVY IKSGTLRSFD RRPSAAVAMN 180 SESQRNPEAS SSLANPQIAE RTSSQGSFSS GDDGSQPIAA DGTFDWDEFI NSEEFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-35 | 3 | 162 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-35 | 3 | 162 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-35 | 3 | 162 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-35 | 3 | 162 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-35 | 3 | 162 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 5e-35 | 3 | 162 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 5e-35 | 3 | 162 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 5e-35 | 3 | 162 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 5e-35 | 3 | 162 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 5e-35 | 3 | 162 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 5e-35 | 3 | 162 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 5e-35 | 3 | 162 | 19 | 168 | NAC domain-containing protein 19 |
4dul_A | 4e-35 | 3 | 162 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 4e-35 | 3 | 162 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008776160.1 | 1e-174 | NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 4e-77 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A2H3WZR8 | 1e-172 | A0A2H3WZR8_PHODC; NAC domain-containing protein 90-like | ||||
STRING | XP_008776160.1 | 1e-173 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 7e-71 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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