PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s791421g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 305aa    MW: 34051.3 Da    PI: 5.1852
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s791421g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-171461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg W++eEde+l+++++ +G g+W+ ++++ g+ R++k+c++rw +yl
  PDK_30s791421g001 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61
                       788*******************************************97 PP
2Myb_DNA-binding54.33.1e-1767111147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rgr+T+eE++l++ ++   G++ W+ Ia++++ gRt++++k++w+++
  PDK_30s791421g001  67 RGRFTPEEEKLIISLHGIVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111
                        89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-25664IPR009057Homeodomain-like
PROSITE profilePS5129417.264961IPR017930Myb domain
SuperFamilySSF466893.74E-3011108IPR009057Homeodomain-like
SMARTSM007171.9E-121363IPR001005SANT/Myb domain
PfamPF002492.2E-151461IPR001005SANT/Myb domain
CDDcd001679.51E-121761No hitNo description
PROSITE profilePS5129425.82962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-2565116IPR009057Homeodomain-like
SMARTSM007177.1E-1766114IPR001005SANT/Myb domain
PfamPF002498.0E-1667111IPR001005SANT/Myb domain
CDDcd001671.33E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901430Biological Processpositive regulation of syringal lignin biosynthetic process
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TPEEEKLIIS LHGIVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKPS  120
TPPSTSPPSI ELVQPGFNSV DQLDAIINQS LSTKPAPDNI FSTHCPMFMF DTSAGDSRPG  180
CSAREELVQD VATLNSDIWN PQNQDQAVLP PLLNFSSGMD STYLPSLVDG MGNMVPMEAQ  240
PCCVGDDGDT SGECFEKQEL NEWMDSQQYS SLLIWDQVQG SLGGEGLPTA TTRTDSMATS  300
FPSTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26141167108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008797178.10.0transcription repressor MYB6-like
TrEMBLA0A2H3YE510.0A0A2H3YE51_PHODC; transcription repressor MYB6-like
STRINGXP_008797178.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60323757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.13e-93myb domain protein 103