PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s790611g005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | C2H2 | ||||||||
Protein Properties | Length: 153aa MW: 17063.7 Da PI: 9.7956 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.7 | 0.0016 | 42 | 64 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+++F++ L H +H PDK_30s790611g005 42 YECRTCNRRFPTFQALGGHRTSH 64 99**********99998888777 PP | |||||||
2 | zf-C2H2 | 13.8 | 0.00017 | 87 | 109 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp Cg F+ L H+r+H PDK_30s790611g005 87 HECPVCGLEFPMGQALGGHMRRH 109 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 23 | No hit | No description |
SuperFamily | SSF57667 | 2.62E-8 | 40 | 109 | No hit | No description |
Pfam | PF13912 | 1.2E-11 | 41 | 66 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.17 | 42 | 64 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.93 | 42 | 69 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 44 | 64 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.9E-12 | 86 | 110 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.059 | 87 | 109 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.182 | 87 | 114 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 89 | 109 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MAGREEGEVE STNLANVLLL LSCNGAKARN IHGIKKPMGR VYECRTCNRR FPTFQALGGH 60 RTSHMRTRFR RDWVEETKKE RKKPRVHECP VCGLEFPMGQ ALGGHMRRHK PTEADEACTG 120 KKAGAGKVLW LDLNLTPSEN DLELTALGLG LAV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010920697.2 | 3e-97 | zinc finger protein ZAT12 | ||||
Swissprot | Q9SLD4 | 8e-25 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | A0A2H3YAC2 | 6e-74 | A0A2H3YAC2_PHODC; zinc finger protein ZAT11-like | ||||
STRING | XP_008794835.1 | 1e-109 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 2e-33 | C2H2 family protein |