PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s789631g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Dof

Protein Properties

Length: 320aa MW: 33923.7 Da PI: 8.6764

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s789631g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.2	1e-39	46	107	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss PDK_30s789631g002 46 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 107 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	42	104	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-33	48	104	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.199	50	104	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	52	88	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MDTAQWPQEI GLVKPMEELV SSTTTSTTCS NTTRPQMMER RARPQKEQAL NCPRCNSTNT 60 KFCYYNNYSL TQPRYFCKTC RRYWTEGGSL RNVPVGGGSR KNKRSSSSAT TSTSASTTSS 120 TVTATSSTVS TSRKLPPELT TAPISLSTSS QNPKFHEGQD LNLAFPHHSL HEFHDFPHLE 180 SGNNNKTSSS SNNGNNPCTA VGALSAMELL RSGMGARGLG PFVPMPMPEY PAGFGVGLQQ 240 FRPPTLGFPL DGVGGGGGGS SGGGGVMQGV QESTGGRLLF PFENLKPVLS STAAEFEQNG 300 GQGGDPPGFW NGMMGGGGSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008806927.1	0.0	dof zinc finger protein 2-like isoform X1
Swissprot	Q9SXG8	2e-67	DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBL	A0A2H3Z148	0.0	A0A2H3Z148_PHODC; dof zinc finger protein 2-like isoform X1
STRING	XP_008806927.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	6e-56	Dof family protein

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]