PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s785981g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 278aa    MW: 31082.2 Da    PI: 6.0501
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s785981g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.66.1e-181461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd +lv +++++G g+W++ +r  g+ R++k+c++rw +yl
  PDK_30s785981g004 14 KGPWTPEEDRILVSYIQRYGHGNWRALPRQAGLLRCGKSCRLRWTNYL 61
                       79******************************99************97 PP
2Myb_DNA-binding52.21.4e-1667112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++T+eE+e++++++++lG++ W++Ia+ +  gRt++++k+ w+++l
  PDK_30s785981g004  67 RGNFTKEEEEIIINLHEMLGNR-WSAIAAQLH-GRTDNEIKNVWHTHL 112
                        89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-26564IPR009057Homeodomain-like
PROSITE profilePS5129417.211961IPR017930Myb domain
SuperFamilySSF466892.26E-3110108IPR009057Homeodomain-like
SMARTSM007171.5E-141363IPR001005SANT/Myb domain
PfamPF002495.5E-161461IPR001005SANT/Myb domain
CDDcd001673.05E-111661No hitNo description
PROSITE profilePS5129425.14962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-2665115IPR009057Homeodomain-like
SMARTSM007173.9E-1466114IPR001005SANT/Myb domain
PfamPF002495.4E-1567112IPR001005SANT/Myb domain
CDDcd001674.43E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MVRAPCCEKM GLKKGPWTPE EDRILVSYIQ RYGHGNWRAL PRQAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF TKEEEEIIIN LHEMLGNRWS AIAAQLHGRT DNEIKNVWHT HLKKRVSPNQ  120
LVQNSNRKRK AGQGDAMAGM EFGPAKLQAI AMVPDGKPGK PSPVPVSPSP SQSCSDISSS  180
ATTNSSAIIG EIGIKEECTD SSAELPEMDD SFWSEALSIE NCDAPMDYNM IAGPPPNSLR  240
DAFSTFSPSN YNDDDMNFWL KLLMEAGDFQ ELPEIWQA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-27121165108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112129KKRVSPNQLVQNSNRKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008805219.10.0transcription factor MYB30 isoform X1
SwissprotQ7XBH41e-82MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A2H3YXB30.0A0A2H3YXB3_PHODC; transcription factor MYB30 isoform X1
STRINGXP_008805219.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-74myb domain protein 15
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]