PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s785961g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

G2-like

Protein Properties

Length: 411aa MW: 45595.4 Da PI: 7.5002

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s785961g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.2	1.8e-33	44	98	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl PDK_30s785961g002 44 KPRLKWTPELHQRFIEAVNQLGGADKATPKTVMRLMGIPGLTLYHLKSHLQKYRL 98 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.326	41	101	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.4E-32	42	99	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.84E-17	43	99	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-23	44	99	IPR006447	Myb domain, plants
Pfam	PF00249	3.3E-10	46	97	IPR001005	SANT/Myb domain
Pfam	PF14379	6.7E-22	138	185	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MYHQHQGKND LFSSRAAFPP ERHLYLQGGN APGNSGLILS TDAKPRLKWT PELHQRFIEA 60 VNQLGGADKA TPKTVMRLMG IPGLTLYHLK SHLQKYRLSK NLQAQVNTGS TKNGSVIAAD 120 RTSEKVCAND MFLDLRTMQI SKALQMNIEA QRQLHEQLEV QRHLQLRIEA QGKYLQSVLE 180 KAQETLGKPS VGSVGLEAAK VQLSELASKV SKECFGTAFP NLKESSSLHT LQGQTTQFSD 240 YSGDSCLTSC EEFQKDRETH NVCVGLGTCP SNSPLCTQQI GKDPTLEQNQ FMWCGNVNEH 300 RLLHSSTVKK NDMSIFPVEG ESNIVTKNIK VQGENGCSIS ISEARRKGID GEDPYLELPN 360 CKRAAVKQER GNQLNEFALP CLTSQLDLNS HDDNDPPPGC RQFDLNGFSW S

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MYHQHQGKND LFSSRAAFPP ERHLYLQGGN APGNSGLILS TDAKPRLKWT PELHQRFIEA  60
VNQLGGADKA TPKTVMRLMG IPGLTLYHLK SHLQKYRLSK NLQAQVNTGS TKNGSVIAAD  120
RTSEKVCAND MFLDLRTMQI SKALQMNIEA QRQLHEQLEV QRHLQLRIEA QGKYLQSVLE  180
KAQETLGKPS VGSVGLEAAK VQLSELASKV SKECFGTAFP NLKESSSLHT LQGQTTQFSD  240
YSGDSCLTSC EEFQKDRETH NVCVGLGTCP SNSPLCTQQI GKDPTLEQNQ FMWCGNVNEH  300
RLLHSSTVKK NDMSIFPVEG ESNIVTKNIK VQGENGCSIS ISEARRKGID GEDPYLELPN  360
CKRAAVKQER GNQLNEFALP CLTSQLDLNS HDDNDPPPGC RQFDLNGFSW S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-21	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-21	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-21	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-21	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029122645.1	0.0	myb-related protein 2-like
Refseq	XP_029122646.1	0.0	myb-related protein 2-like
TrEMBL	A0A2H3Z2A6	0.0	A0A2H3Z2A6_PHODC; myb-related protein 2-like isoform X1
STRING	XP_008792509.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12279	31	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-110	G2-like family protein