PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s783921g004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB | ||||||||
Protein Properties | Length: 121aa MW: 14302.4 Da PI: 10.6754 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.3 | 6.3e-17 | 15 | 60 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l ++v+ +G+ +W++Ia+++ gR++k+c++rw++ PDK_30s783921g004 15 RGHWRPAEDSKLRELVAIYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 60 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 57.1 | 4.1e-18 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l a++++G++ W+ Iar ++ gRt++ +k++w+ PDK_30s783921g004 67 RRAFSEEEEEKLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 110 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.904 | 10 | 61 | IPR017930 | Myb domain |
SMART | SM00717 | 4.6E-14 | 14 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.24E-29 | 15 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.1E-16 | 15 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-27 | 16 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.74E-12 | 18 | 59 | No hit | No description |
PROSITE profile | PS51294 | 26.724 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.7E-15 | 67 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.77E-10 | 69 | 109 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-21 | 69 | 115 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
MALQQCGGSK GMETRGHWRP AEDSKLRELV AIYGPQNWNL IAEKLEGRSG KSCRLRWFNQ 60 LDPRINRRAF SEEEEEKLMA AHRLYGNKWA MIARLFPGRT DNAVKNHWHV IMARKYREHL 120 R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-34 | 14 | 115 | 6 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM662592 | 3e-93 | KM662592.1 Ananas bracteatus clone 46432b microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010939814.1 | 7e-73 | transcription factor MYB52 | ||||
Swissprot | Q9SEZ4 | 4e-71 | MY105_ARATH; Transcription factor MYB105 | ||||
TrEMBL | A0A2H3XHD6 | 5e-71 | A0A2H3XHD6_PHODC; transcription factor CSA-like | ||||
TrEMBL | K9LVY6 | 3e-71 | K9LVY6_9ASPA; R2R3 MYB (Fragment) | ||||
STRING | XP_008783843.1 | 9e-72 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 2e-73 | myb domain protein 105 |
Publications ? help Back to Top | |||
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