PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s783921g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 370aa    MW: 40540.7 Da    PI: 7.2876
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s783921g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.4e-1694139147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg W + Ed +l ++v+ +G+ +W++Ia+++  gR++k+c++rw++ 
  PDK_30s783921g003  94 RGHWRPAEDSKLRELVAIYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 139
                        899*****************************.***********996 PP
2Myb_DNA-binding54.42.8e-17146189146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        r ++++eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ 
  PDK_30s783921g003 146 RRAFSEEEEEKLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 189
                        678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.14789140IPR017930Myb domain
SMARTSM007174.2E-1493142IPR001005SANT/Myb domain
SuperFamilySSF466891.09E-2794187IPR009057Homeodomain-like
PfamPF002491.5E-1594139IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-2695147IPR009057Homeodomain-like
CDDcd001672.76E-1397138No hitNo description
PROSITE profilePS5129426.724141195IPR017930Myb domain
SMARTSM007171.8E-14145193IPR001005SANT/Myb domain
PfamPF002494.5E-14146188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-20148194IPR009057Homeodomain-like
CDDcd001677.23E-12148188No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEGVFADISS LSINPTTSAG NHHCTKSSEK TSWTFPFMQK SEVGHKCSGG SDGSGEKESS  60
AIGEESPDGE NTTNEGSLGG RETVDCGQSK LCARGHWRPA EDSKLRELVA IYGPQNWNLI  120
AEKLEGRSGK SCRLRWFNQL DPRINRRAFS EEEEEKLMAA HRLYGNKWAM IARLFPGRTD  180
NAVKNHWHVI MARKYREQSN AYRRRKLMSQ AAQRRLEEGA ATTTTAAASG FGHCPSPSFT  240
FPAAINGSIG SHHMTLGVGD SLSSHNGFHT QQTPFDFLSG NRAHDNADFG SNSSWGWPRD  300
VSFMGFYHHP PFILAMQQPS HASHYSDSTA SAASRVSALE SSSSEENKEG GRFEATVSPT  360
FIDFLGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-32941947107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6625922e-97KM662592.1 Ananas bracteatus clone 46432b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008783843.10.0transcription factor CSA-like
SwissprotQ9SEZ49e-77MY105_ARATH; Transcription factor MYB105
TrEMBLA0A2H3XHD60.0A0A2H3XHD6_PHODC; transcription factor CSA-like
STRINGXP_008783843.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-76myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]