PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s782571g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family AP2
Protein Properties Length: 806aa    MW: 89748.5 Da    PI: 8.4592
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s782571g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.71.7e-14135185155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV+ +k  grW+A+   +     +k+++lg f+t+eeAa+a+++a+ k +g
  PDK_30s782571g001 135 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDKAAIKCNG 185
                        89********.7******5553..2.26**********************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.3E-61992IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-1019101IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-1420100IPR001471AP2/ERF domain
PROSITE profilePS5103215.93620100IPR001471AP2/ERF domain
SMARTSM003802.2E-2420106IPR001471AP2/ERF domain
PfamPF008473.2E-10135185IPR001471AP2/ERF domain
CDDcd000182.01E-24135195No hitNo description
SuperFamilySSF541711.24E-17135195IPR016177DNA-binding domain
PROSITE profilePS5103216.423136193IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-17136193IPR001471AP2/ERF domain
SMARTSM003807.0E-33136199IPR001471AP2/ERF domain
PfamPF041952.3E-4627704IPR007321Transposase (putative), gypsy type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 806 aa     Download sequence    Send to blast
MGASRPMKKS RRGPRSRSSQ YRGVTFYRRT GRWESHICFS FIAFFTAPQA IMSIYSSPFV  60
CRDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGVDADINFN LEDYEEDMKQ ASNLTKEEFV  120
HILRRQSTGY PRGSSKYRGV TLHKCGRWEA RMGQFLGKKY VYLGLFDTEE EAARAYDKAA  180
IKCNGKDAAT NFDPSLYADE LGAAGRFLLC ACCIFNGHNR IARRLALSPS RKHVYEFVDA  240
AAGRGDHDLD LSLGNSSSKR SGGLELMADD SQGGADQRVP VAFEPGWRAS MPSTRPEFLD  300
SNGNRNSNSS FGARTGGGGL YLAIRGEQQQ QQQQRQSNWS NRVSRITVKV DFRPHYILIT  360
FESEPVFDSS DGSSQLGSLP PVSRHRLNCL DLSMEGGENG AKEQEEQEEN TAALPTQDVT  420
VELPLSSSVE LSWRHWGRLS LAEVPLEIGS SICDCLADIE VGFLRLRKND MVPQILFVAG  480
NWTRRRPSAE KEELRREADV VPSAGGVLRR TCKKLVVGIS GAGPLMPKSE GANFPPAALR  540
GVSRRSSRFL FFESSTFSAE ISVGAPRPLG GFMLFYPLFF FYHFLSGMGH GPDEVGSTLS  600
SEELEMAAEW FFPLCGFRLE PAGSEDRVTR PPPGRIRVYV ETLWAGLRFS LHGFVNELLA  660
TYQLVPAQLA PNAWRTIVDF LSLCFAHGIP TSVNVFRRCF LLKSNPRDGE WLYLAFRSGR  720
PLFRGAPTSI HGWKGKFFFL SSERAWGFDT RWGQARLKTA NKLSRLSDSE QGILDAFYGL  780
EEDILLNDLV SEVALVNIGL SSALPE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-84AP2 family protein