PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s779001g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 139aa MW: 16181 Da PI: 10.4724 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.1 | 1.3e-29 | 76 | 123 | 4 | 51 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 enk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs+ gklye++s PDK_30s779001g001 76 ENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNCGKLYEFCS 123 8*********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.9E-29 | 66 | 124 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-25 | 67 | 87 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-25 | 75 | 126 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.2E-25 | 76 | 121 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.226 | 76 | 125 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-25 | 87 | 102 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-25 | 102 | 123 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MSNERPSLQL KGSFLSKIKT AITFDYWWRL SHFFLILPLF EDHDVRGLGI RKNLCPKLSQ 60 RLPSSFEREK RTGERENKIN RQVTFAKRRN GLLKKAYELS VLCDAEVALI IFSNCGKLYE 120 FCSSSRSQGK GMLLLRFLC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1c7u_A | 3e-15 | 80 | 125 | 15 | 60 | MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM |
1c7u_B | 3e-15 | 80 | 125 | 15 | 60 | MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF411845 | 2e-64 | AF411845.1 Elaeis guineensis MADS box transcription factor (AGL2-3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | XP_008779700.1 | 3e-55 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24260.3 | 3e-28 | MIKC_MADS family protein |