PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s778211g005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB | ||||||||
Protein Properties | Length: 139aa MW: 16181.2 Da PI: 10.6336 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.4 | 1.7e-18 | 18 | 63 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G+ +W++Ia++++ gR++k+c++rw++ PDK_30s778211g005 18 RGHWRPGEDEKLRQLVEQYGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 63 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 61.9 | 1.3e-19 | 71 | 113 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ PDK_30s778211g005 71 RPFTEEEEERLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWHV 113 69*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.395 | 13 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.65E-30 | 17 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-14 | 17 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-17 | 18 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-28 | 19 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.39E-13 | 21 | 62 | No hit | No description |
PROSITE profile | PS51294 | 27.587 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-16 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-16 | 70 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-22 | 72 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.51E-8 | 81 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MGSSSGATGS DDTKACPRGH WRPGEDEKLR QLVEQYGPQN WNSIAEKLQG RSGKSCRLRW 60 FNQLDPRINK RPFTEEEEER LLAAHRIHGN KWALIARLFP GRTDNAVKNH WHVIMARRHR 120 ERSRLFGKRS CQDYISDST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-33 | 18 | 118 | 7 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. | |||||
UniProt | Transcription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}. | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008808497.1 | 1e-100 | transcription factor MYB52 | ||||
Swissprot | Q5NBM8 | 2e-67 | CSA_ORYSJ; Transcription factor CSA | ||||
Swissprot | Q6R0C4 | 1e-67 | MYB52_ARATH; Transcription factor MYB52 | ||||
TrEMBL | A0A2H3Z525 | 8e-99 | A0A2H3Z525_PHODC; transcription factor MYB52 | ||||
STRING | XP_008808497.1 | 1e-99 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 2e-65 | myb domain protein 52 |