PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s778141g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NAC | ||||||||
Protein Properties | Length: 351aa MW: 39360.3 Da PI: 8.5532 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161 | 4.6e-50 | 16 | 141 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + PDK_30s778141g001 16 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIR 106 79***************************.89***************8778899************************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++ +glkktLvfy+g+apkg +t+W+m+eyrl PDK_30s778141g001 107 AENHRSIGLKKTLVFYTGKAPKGIRTSWIMNEYRL 141 *********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 55.588 | 15 | 162 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.09E-56 | 15 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.4E-25 | 17 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MSADDGRDAH EDDLVMPGFR FHPTEEELIE FYLRRKVEGK RFNVELITFL DLYRYDPWEL 60 PALAAIGEKE WFFYVPRDRK YRNGDRPNRV TTSGYWKATG ADRMIRAENH RSIGLKKTLV 120 FYTGKAPKGI RTSWIMNEYR LPHSETDRHQ KAEISLCRVY KRAGVDDRCQ LPGTLSSKAS 180 SSRGTGPDKK HGSSHQPPPS FQTFAGDSSS SVMEKAPKIG GEGSTHLSAP VLQKPALYRS 240 TASVASLGST TSTEEDGTSL HYPKNTTALI STCSVLTPAT SCMASPTIDE LHSLVGYNQN 300 YLNQPYQSLP SQLQPQLLPL NALPVSFPTI SDKLWEWNPL HEVGRDFASF K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 4e-55 | 17 | 162 | 22 | 168 | NAC domain-containing protein 19 |
3swm_B | 4e-55 | 17 | 162 | 22 | 168 | NAC domain-containing protein 19 |
3swm_C | 4e-55 | 17 | 162 | 22 | 168 | NAC domain-containing protein 19 |
3swm_D | 4e-55 | 17 | 162 | 22 | 168 | NAC domain-containing protein 19 |
3swp_A | 4e-55 | 17 | 162 | 22 | 168 | NAC domain-containing protein 19 |
3swp_B | 4e-55 | 17 | 162 | 22 | 168 | NAC domain-containing protein 19 |
3swp_C | 4e-55 | 17 | 162 | 22 | 168 | NAC domain-containing protein 19 |
3swp_D | 4e-55 | 17 | 162 | 22 | 168 | NAC domain-containing protein 19 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008804076.1 | 0.0 | NAC domain-containing protein 35-like isoform X1 | ||||
Refseq | XP_026664392.1 | 0.0 | NAC domain-containing protein 35-like isoform X1 | ||||
TrEMBL | A0A2H3YUM2 | 0.0 | A0A2H3YUM2_PHODC; NAC domain-containing protein 35-like isoform X1 | ||||
STRING | XP_008804076.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7706 | 36 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.2 | 1e-106 | NAC domain containing protein 35 |