PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s772411g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 896aa MW: 103649 Da PI: 6.411

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s772411g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87.3	2.3e-27	130	218	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY +YA++vGFsvr+sks++s+++++i++r+fvCskeg++ ++ + + k++r+ra+ r gCka+++v +++ g+w+vtkl++eH+H + PDK_30s772411g001 130 FYMAYASRVGFSVRISKSRRSRNDESIIMRRFVCSKEGFHLKKGNYdDGKKKRKRATIREGCKAMIEVIQKYYGRWVVTKLVKEHSHVV 218 9*************************************9998875788999********************************75 PP
2	FAR1	80.8	2.5e-25	252	341	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y +YA+++GF+vr++ s++s+r++++++r+fvC+keg++ e++ ++k++r+r+ tr gCka+++v k++ +kw v+kl++eH+H+la PDK_30s772411g001 252 YYYAYASRIGFDVRIRLSRRSTRDETFVMRRFVCTKEGFNPYEDNYdESKKKRNRTPTREGCKAMFEVIKKDYDKWIVSKLVTEHTHDLA 341 8*************************************999988567888899******************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-25	130	218	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	2.2E-23	252	341	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.4E-27	464	556	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.88	753	789	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.2E-7	762	787	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.3E-6	764	791	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 896 aa Download sequence Send to blast
MALYVIMSRT GIMTGRQITE TESAVMTFQL HYTDCGSCCS LLSLFTCLNV GSLAGFDFLA 60 MESTSSEDDG SLRDNNVDLN DDNMDHHMTL EVSSHLVEAD NLFSSHQQGT ENLEPFVGME 120 FESEEAAKLF YMAYASRVGF SVRISKSRRS RNDESIIMRR FVCSKEGFHL KKGNYDDGKK 180 KRKRATIREG CKAMIEVIQK YYGRWVVTKL VKEHSHVVAA PNRVRYVVPE EYAQADPYVG 240 MEFPSHEAAQ TYYYAYASRI GFDVRIRLSR RSTRDETFVM RRFVCTKEGF NPYEDNYDES 300 KKKRNRTPTR EGCKAMFEVI KKDYDKWIVS KLVTEHTHDL AIAPSKVHYI QSQSEVVVLA 360 KSGTINHEKS ATPSNSKALL VESLGGFNNV LSNDQDYRSD MKNVGKNAFG VEDTQNLLEY 420 FKRMHAENQT FSYAFQVDKN NCLTHAFWAD AKAKMAYYCF GDAVTFDTSF KEDKNMVPFV 480 MFTGVNHHLQ SVIFGCALIT DETEASYVWL FENWLVAMCG RPPVSLITDY HEDMGSAISK 540 VFPATRHRLC KWHILSKCKE KLANLYLTCV TFEEELEKCI NESETFEIFE SQWKSILDKY 600 DLGENSWMQF LYSIRQKWVP VYLKDAFTAE ISAIQRPESL NKFFEKPESL NKFFEKYFYL 660 KTPLLVFVSL FEQAMAGWYE RENLEDLATS FTRPILKTPS NMLKQVADYY TRTIFDIFQE 720 EFVESLGYYV DKIQDGEGSK YNVAKEEDAR TTYIVTHDFS EKRTNCSCCK FETSGILCRH 780 ILRVFLTIDV RVLPDYYILK RWTKDAKSGF MLDECVRYNE LYRDAVKYAK EGSTSAEAYT 840 VAKDSLQIAF ADVIAAKKDL MNRCPMFVNV EHWKKNDEEQ VARLYVVFVA KVTDDQ

Sequence ? help Back to Top

Protein Sequence Length: 896 aa Download sequence Send to blast

MALYVIMSRT GIMTGRQITE TESAVMTFQL HYTDCGSCCS LLSLFTCLNV GSLAGFDFLA  60
MESTSSEDDG SLRDNNVDLN DDNMDHHMTL EVSSHLVEAD NLFSSHQQGT ENLEPFVGME  120
FESEEAAKLF YMAYASRVGF SVRISKSRRS RNDESIIMRR FVCSKEGFHL KKGNYDDGKK  180
KRKRATIREG CKAMIEVIQK YYGRWVVTKL VKEHSHVVAA PNRVRYVVPE EYAQADPYVG  240
MEFPSHEAAQ TYYYAYASRI GFDVRIRLSR RSTRDETFVM RRFVCTKEGF NPYEDNYDES  300
KKKRNRTPTR EGCKAMFEVI KKDYDKWIVS KLVTEHTHDL AIAPSKVHYI QSQSEVVVLA  360
KSGTINHEKS ATPSNSKALL VESLGGFNNV LSNDQDYRSD MKNVGKNAFG VEDTQNLLEY  420
FKRMHAENQT FSYAFQVDKN NCLTHAFWAD AKAKMAYYCF GDAVTFDTSF KEDKNMVPFV  480
MFTGVNHHLQ SVIFGCALIT DETEASYVWL FENWLVAMCG RPPVSLITDY HEDMGSAISK  540
VFPATRHRLC KWHILSKCKE KLANLYLTCV TFEEELEKCI NESETFEIFE SQWKSILDKY  600
DLGENSWMQF LYSIRQKWVP VYLKDAFTAE ISAIQRPESL NKFFEKPESL NKFFEKYFYL  660
KTPLLVFVSL FEQAMAGWYE RENLEDLATS FTRPILKTPS NMLKQVADYY TRTIFDIFQE  720
EFVESLGYYV DKIQDGEGSK YNVAKEEDAR TTYIVTHDFS EKRTNCSCCK FETSGILCRH  780
ILRVFLTIDV RVLPDYYILK RWTKDAKSGF MLDECVRYNE LYRDAVKYAK EGSTSAEAYT  840
VAKDSLQIAF ADVIAAKKDL MNRCPMFVNV EHWKKNDEEQ VARLYVVFVA KVTDDQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010909612.1	0.0	protein FAR1-RELATED SEQUENCE 5, partial
TrEMBL	A0A2I0XCI6	0.0	A0A2I0XCI6_9ASPA; Protein FAR1-RELATED SEQUENCE 5
STRING	OB03G39100.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-161	FAR1-related sequence 5