PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s771701g004

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

G2-like

Protein Properties

Length: 415aa MW: 46110.6 Da PI: 7.2341

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s771701g004	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.2	8.9e-34	46	100	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLHerF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl PDK_30s771701g004 46 KPRLKWTPELHERFIEAVNQLGGPDKATPKTVMRLMGIPGLTLYHLKSHLQKYRL 100 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.389	43	103	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.8E-32	44	101	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.3E-17	45	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-23	46	101	IPR006447	Myb domain, plants
Pfam	PF00249	1.8E-10	48	99	IPR001005	SANT/Myb domain
Pfam	PF14379	2.1E-25	145	192	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MYHHQHHQGP SNLLASRVSF PPERHLFLQG GSVPGESGLV LSTDAKPRLK WTPELHERFI 60 EAVNQLGGPD KATPKTVMRL MGIPGLTLYH LKSHLQKYRL SKSLQAQPNT GTTKNGCPLA 120 ADRTAEGNGS LMSNTTVASQ TNKTMQISEA LQMQIEVQRR LHEQLEVQRH LQLRIEAQGK 180 YLQSVLEKAQ ETLGKQNLGS AGLEAAKVQL SELVSKVSNE CLNTTFPGLE EISGFHTLQA 240 HAAQFADCSV NSYLTSCEGS QKEQEKYNVS MGTYLGNSHP CLQQFRADTG LEQAQLAWHG 300 DLNEQKTFSP SILQDSEVTF FPVQRDSRTL TMNIKAEREK VDSSTVSDAR RKEKDSKDAF 360 LERNSKRPAA LQERGKESNG FGLQSVTTQL DLNAHEENDG PPNCKQFDLN GFSWS

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MYHHQHHQGP SNLLASRVSF PPERHLFLQG GSVPGESGLV LSTDAKPRLK WTPELHERFI  60
EAVNQLGGPD KATPKTVMRL MGIPGLTLYH LKSHLQKYRL SKSLQAQPNT GTTKNGCPLA  120
ADRTAEGNGS LMSNTTVASQ TNKTMQISEA LQMQIEVQRR LHEQLEVQRH LQLRIEAQGK  180
YLQSVLEKAQ ETLGKQNLGS AGLEAAKVQL SELVSKVSNE CLNTTFPGLE EISGFHTLQA  240
HAAQFADCSV NSYLTSCEGS QKEQEKYNVS MGTYLGNSHP CLQQFRADTG LEQAQLAWHG  300
DLNEQKTFSP SILQDSEVTF FPVQRDSRTL TMNIKAEREK VDSSTVSDAR RKEKDSKDAF  360
LERNSKRPAA LQERGKESNG FGLQSVTTQL DLNAHEENDG PPNCKQFDLN GFSWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008793331.1	0.0	myb-related protein 2 isoform X1
Refseq	XP_008793332.1	0.0	myb-related protein 2 isoform X1
Refseq	XP_017698938.1	0.0	myb-related protein 2 isoform X1
Swissprot	Q9SQQ9	1e-121	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A2H3Y4K5	0.0	A0A2H3Y4K5_PHODC; myb-related protein 2 isoform X1
STRING	XP_008793331.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3574	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-123	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]