PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s771491g005

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

C3H

Protein Properties

Length: 412aa MW: 44840 Da PI: 8.5564

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s771491g005	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.9	2.7e-06	14	25	15	26
-TTTTT-SS-SS CS zf-CCCH 15 CkyGdrCkFaHg 26 C+yGdrCkF H+ PDK_30s771491g005 14 CQYGDRCKFLHV 25 ***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	8.972	1	27	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005635	Cellular Component	nuclear envelope
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MEKERERKKC NHCCQYGDRC KFLHVVPQQS KPSTFGFGVQ SALHLGQNTQ QQKPNPFGFG 60 VSNNSQLKGA SNLGARNQSS SRPFENKWTR SSSIAATTST SSQQNDSQAQ AAIHKCMDPE 120 SCKRQIVEDF KNEAPLWKLT CYGHCKNGPC DIVGDISFEE LRAAAYEDAR RGLNLQSIRG 180 MIMVCHTVPN RVAWSILYLY RGRTDTLIMV ERERSLLNSK LIEFDNLLQN PYVLRNPSSS 240 GTSLFAVTNS NASLIGAQTN APPSFSSFSQ LGVSANLGST IRPSVPGTPP STVFNEPNSF 300 QSISQTSSGF AMKFGTSGIG SQLPTQPSGS SLGPNSSNFN NSVRAAGNEH FSFPAVSPQF 360 SSTNNASPNF LDGPKVASTT AHLASVMEKQ NVSPDDSIWL KEEWAIGELS NF

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MEKERERKKC NHCCQYGDRC KFLHVVPQQS KPSTFGFGVQ SALHLGQNTQ QQKPNPFGFG  60
VSNNSQLKGA SNLGARNQSS SRPFENKWTR SSSIAATTST SSQQNDSQAQ AAIHKCMDPE  120
SCKRQIVEDF KNEAPLWKLT CYGHCKNGPC DIVGDISFEE LRAAAYEDAR RGLNLQSIRG  180
MIMVCHTVPN RVAWSILYLY RGRTDTLIMV ERERSLLNSK LIEFDNLLQN PYVLRNPSSS  240
GTSLFAVTNS NASLIGAQTN APPSFSSFSQ LGVSANLGST IRPSVPGTPP STVFNEPNSF  300
QSISQTSSGF AMKFGTSGIG SQLPTQPSGS SLGPNSSNFN NSVRAAGNEH FSFPAVSPQF  360
SSTNNASPNF LDGPKVASTT AHLASVMEKQ NVSPDDSIWL KEEWAIGELS NF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008796916.1	0.0	zinc finger CCCH domain-containing protein 46
TrEMBL	A0A2H3YCV0	0.0	A0A2H3YCV0_PHODC; zinc finger CCCH domain-containing protein 46
STRING	XP_008796918.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9447	28	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75340.2	1e-53	C3H family protein