PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s770951g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ARF
Protein Properties Length: 845aa    MW: 94244.8 Da    PI: 7.3426
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s770951g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.31.3e-22141242199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++ +++a+e+        ++   s++l  +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F   
  PDK_30s770951g002 141 FCKTLTASDTSTHGGFSVLRRHADEClppldmcRQP--PSQELAAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL-- 228
                        99*****************************75434..4569************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        + +++el+v+v+r+
  PDK_30s770951g002 229 RGENGELRVGVRRA 242
                        449999*****985 PP
2Auxin_resp121.37.4e-40267349183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        a+ha++t+++F+v+Y+Pr+s+seF+v++++++++lk++ s+GmRfkm+fe+e+ +e+r++Gt+vg+ d+dp rWp+SkWr+Lk
  PDK_30s770951g002 267 AWHAVNTGTMFTVYYKPRTSPSEFIVPYNQYMESLKSNHSIGMRFKMRFEGEETPEQRFTGTIVGIGDADPNRWPGSKWRCLK 349
                        89*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-40133270IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-40134256IPR015300DNA-binding pseudobarrel domain
CDDcd100175.80E-21139241No hitNo description
PROSITE profilePS5086311.434141243IPR003340B3 DNA binding domain
SMARTSM010192.8E-21141243IPR003340B3 DNA binding domain
PfamPF023622.4E-20141242IPR003340B3 DNA binding domain
PfamPF065072.6E-37267349IPR010525Auxin response factor
PfamPF023091.9E-12628804IPR033389AUX/IAA domain
SuperFamilySSF542774.51E-12717796No hitNo description
PROSITE profilePS5174523.791719803IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    Send to blast
MASSEVSAVK GSNGSFSSGC SEFNEDGAGG DSEDALYTEL WLACAGPLVT VPRAGERVFY  60
FPQGHIEQVE ASTNQVAEQQ MPVYNLPSKI LCRVINVQLK AEPDTDEVFA QVTLLPEKQD  120
ENAVEKETLP PTPPRPHVHS FCKTLTASDT STHGGFSVLR RHADECLPPL DMCRQPPSQE  180
LAAKDLHGVE WRFRHIFRGQ PRRHLLQSGW SVFVSSKRLV AGDAFIFLRG ENGELRVGVR  240
RALRQQTNIP SSVISSHSMH LGILATAWHA VNTGTMFTVY YKPRTSPSEF IVPYNQYMES  300
LKSNHSIGMR FKMRFEGEET PEQRFTGTIV GIGDADPNRW PGSKWRCLKV RWDETSSVPR  360
PERVSPWKIE PALSPPMNPP PVPRPKRPRS NVMPCSPDSS ILTKEAASKV NVDPSHSHGT  420
TRVLQGQELM TLRSSFADDK ESENAQKPIM WSSSHDEEKT DASVQRRLGS EKRWMQMVRP  480
EPTYADLLSG YRPHDSHGFS STLFEQNPGE AYLLKNHFQD TEGRHNMLPG QWSLMPPNSS  540
FASHELNFKI TAQPGEHSYQ KAGSMRCAGK VGYSALQGLG IEQHSPNWLT HLLPTSRMEN  600
PSQSRAVKPQ SLIASQNDKK PKAGGNCKLF GFHLNSNTTA SDVVASQQMN ASTHEPEAHS  660
YAAASSKQPQ AIEADKHSEP AKVMKSADPT PVGSEPERNL QPCPQTSKDL QRKQNGSTRS  720
CTKVHKQGIA LGRSVDLTKF NSYHELLAEL DHMFEFEGEL MAPNKNWLVV YTDNEGDMML  780
VGDDPWHEFC SMVRKIFIYT REEVQRMNPG TLSSRVEESP ASSEERTAAK GRKGLRSSMQ  840
SYIDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1772937112354Auxin response factor 1
4ldw_A1e-1772937112354Auxin response factor 1
4ldw_B1e-1772937112354Auxin response factor 1
4ldx_A1e-1772937112354Auxin response factor 1
4ldx_B1e-1772937112354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008791039.10.0auxin response factor 23-like isoform X1
SwissprotA2ZET60.0ARFW_ORYSI; Auxin response factor 23
TrEMBLA0A2H3XZJ50.0A0A2H3XZJ5_PHODC; Auxin response factor
STRINGXP_008791039.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2