PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s766981g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ARF
Protein Properties Length: 422aa    MW: 46958 Da    PI: 7.907
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s766981g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.65.7e-24150251199
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+k+lt sd++++g +++ +++a+e+       +++++ ++l+ +d++g +W++++i+r++++r++l++GW++Fv++++L +gD ++F   +
  PDK_30s766981g001 150 FCKTLTASDTSTHGGFSVLRRHADEClppldmRLQPPT-QELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSGFVSSKRLVAGDAFIFL--R 238
                        99*****************************9667665.49************************************************..4 PP

                        SSEE..EEEEE-S CS
                 B3  87 rsefelvvkvfrk 99 
                         + +el+v+v+r+
  PDK_30s766981g001 239 GEHGELRVGVRRA 251
                        49999*****996 PP
2Auxin_resp117.61e-38276358183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        a+ha++t+++F+v+Y+Pr+s+seF+v++++++++lk+++s+GmRfkm+fe+e+++e+r+ Gt+vg+ d d+++Wp+SkWr+L+
  PDK_30s766981g001 276 AWHAVTTGTIFTVYYKPRTSPSEFIVPYDRYMESLKNNYSIGMRFKMRFEGEEAPEQRFPGTIVGIGDGDSSSWPGSKWRCLQ 358
                        89********************************************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-42143279IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.3E-41143265IPR015300DNA-binding pseudobarrel domain
CDDcd100172.85E-22148250No hitNo description
SMARTSM010191.5E-22150252IPR003340B3 DNA binding domain
PfamPF023626.1E-22150251IPR003340B3 DNA binding domain
PROSITE profilePS5086311.787150252IPR003340B3 DNA binding domain
PfamPF065074.1E-36276358IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MASSEVTTRA NGGNGRGESF SSVCSESGAD AARTPASAAP RRDAEEALYT ELWFACAGPL  60
ATIPRNGERV FYFPQGHIEQ VVASTNQLAD KQVKIYDLPS KILCRVINAE QETDEVFAQV  120
TLLPEANQDE NALEKENLPS PPPRPHVHSF CKTLTASDTS THGGFSVLRR HADECLPPLD  180
MRLQPPTQEL VAKDLHGVEW RFRHIFRGQP RRHLLQSGWS GFVSSKRLVA GDAFIFLRGE  240
HGELRVGVRR AMRQQTNVPS SVISSHSMHL GVLATAWHAV TTGTIFTVYY KPRTSPSEFI  300
VPYDRYMESL KNNYSIGMRF KMRFEGEEAP EQRFPGTIVG IGDGDSSSWP GSKWRCLQVR  360
WDETSSIPRP ERVSPWNLEP ALTPPLNPLP TPKTKRPRPN AMPSSPDSSV LTKEGNNMII  420
ES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-174313802354Auxin response factor 1
4ldw_A1e-174313802354Auxin response factor 1
4ldw_B1e-174313802354Auxin response factor 1
4ldx_A1e-174313802354Auxin response factor 1
4ldx_B1e-174313802354Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1394398KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) (By similarity). Could act as transcriptional activator or repressor. Involved in the control of fruit ripening process. Regulates expression of a number of ripening regulators, transcription factors, and ethylene biosynthesis and signaling components (PubMed:26716451, PubMed:26959229). May act as a transcriptional repressor of auxin-responsive genes (PubMed:26716451). {ECO:0000255|RuleBase:RU004561, ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By tomato fruit ripening. Expression is up-regulated by plant hormone auxin in tomato fruits. {ECO:0000269|PubMed:26716451}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008790695.10.0auxin response factor 2A-like isoform X1
RefseqXP_008790697.10.0auxin response factor 2A-like isoform X1
RefseqXP_008790698.10.0auxin response factor 2A-like isoform X1
RefseqXP_008790699.10.0auxin response factor 2A-like isoform X2
SwissprotK4DF010.0ARF2B_SOLLC; Auxin response factor 2B
TrEMBLA0A2H3XYI40.0A0A2H3XYI4_PHODC; Auxin response factor
TrEMBLA0A2H3XYR80.0A0A2H3XYR8_PHODC; Auxin response factor
STRINGXP_008790696.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Breitel DA, et al.
    AUXIN RESPONSE FACTOR 2 Intersects Hormonal Signals in the Regulation of Tomato Fruit Ripening.
    PLoS Genet., 2016. 12(3): p. e1005903
    [PMID:26959229]