PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s765911g008
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 292aa    MW: 32453.3 Da    PI: 8.0958
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s765911g008genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.53.2e-33602001128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..... 79 
                        lp+G++F+Ptd+el+ e+L+ k++ ++      ++++  +i+   +i++++P++Lp  v+ +    +fF++ +k+y+tg+rk+r+++     
  PDK_30s765911g008  60 LPAGVKFDPTDQELL-EHLEGKARPDSqklhplIDEFIpTIEGEnGICYTHPEKLP-GVSRDGLLRHFFHRPSKAYTTGTRKRRKVSadehg 149
                        799************.99****998885565443332233665557**********.555555677******************74445554 PP

                NAM  80 .sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                         + +W++tgk+++v++ +g+l+g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  PDK_30s765911g008 150 gETRWHKTGKTRPVFA-GGKLKGYKKILVLYtnYGKQQKPEKTNWVMHQYHL 200
                        5778************.9*************65589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-3852219IPR003441NAC domain
PROSITE profilePS5100533.60460219IPR003441NAC domain
PfamPF023654.0E-1561200IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MRWCNSCDDD RMIERSSGSS SAPIGKKCHA NAIETCPSCG HHIQYEEQAA AAAIQDLPGL  60
PAGVKFDPTD QELLEHLEGK ARPDSQKLHP LIDEFIPTIE GENGICYTHP EKLPGVSRDG  120
LLRHFFHRPS KAYTTGTRKR RKVSADEHGG ETRWHKTGKT RPVFAGGKLK GYKKILVLYT  180
NYGKQQKPEK TNWVMHQYHL GSDEEEKDGE LVVSKVFYQT QPRQCGSATK GTVQAKSKDI  240
DSDDNPILKD ASIVDYYNSS LIAYNQGGHN RASSPHLIPN FNVHAGGTSF LP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008798265.10.0NAC domain-containing protein 73-like
SwissprotO494591e-123NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A2H3YG130.0A0A2H3YG13_PHODC; NAC domain-containing protein 73-like
STRINGXP_008798265.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-124NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]