PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s765701g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GRAS
Protein Properties Length: 292aa    MW: 33557.8 Da    PI: 6.4219
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s765701g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS218.24.2e-6718288155373
               GRAS 155 keeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll................................ 214
                        ke l+ t+  L+k Ae+l++pf+fn+ v++rl++l++e+Lr+k+gEala+n+vlqlh+ll                                
  PDK_30s765701g001  18 KELLSYTATCLNKEAERLDIPFQFNP-VVSRLDNLDIESLRLKTGEALAINSVLQLHSLLttndegrscrimpmpainsnmaqlhgvsqatl 108
                        6678889999****************.7**************************************************************** PP

               GRAS 215 .........................desvsleserdevLklvk.slsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                                                 +       + +++  +++ +l Pkv+v++eqe++hns+   erf++a ++y++lfd+le++lpr+s 
  PDK_30s765701g001 109 rellekevingytpspdslsppfalAPAP----RMERFFAALQaRLPPKVMVITEQESNHNSPMMNERFTKAQYFYATLFDCLESTLPRHSV 196
                        ****************9997765533333....344566666538*********************************************** PP

               GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                        er+ vE+  +g+ei+n++aceg er+erhe+le+W +rle aGF+ v+ls ++  qa++llr+++ +gy+v+ ++g+++++W+++pL+svSa
  PDK_30s765701g001 197 ERMRVEKL-FGEEIKNIIACEGLERTERHEKLERWAQRLELAGFSRVSLSFEVLLQARMLLRNFGCEGYMVNIHNGCIMIYWQSQPLFSVSA 287
                        ******98.*********************************************************************************** PP

               GRAS 373 W 373
                        W
  PDK_30s765701g001 288 W 288
                        * PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.231269IPR005202Transcription factor GRAS
PfamPF035141.5E-6418288IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDAMEEEKMI HIIDLHHKEL LSYTATCLNK EAERLDIPFQ FNPVVSRLDN LDIESLRLKT  60
GEALAINSVL QLHSLLTTND EGRSCRIMPM PAINSNMAQL HGVSQATLRE LLEKEVINGY  120
TPSPDSLSPP FALAPAPRME RFFAALQARL PPKVMVITEQ ESNHNSPMMN ERFTKAQYFY  180
ATLFDCLEST LPRHSVERMR VEKLFGEEIK NIIACEGLER TERHEKLERW AQRLELAGFS  240
RVSLSFEVLL QARMLLRNFG CEGYMVNIHN GCIMIYWQSQ PLFSVSAWGC RR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-20149291239380Protein SCARECROW
5b3h_D3e-20149291239380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008787590.10.0scarecrow-like protein 3
SwissprotQ9LPR81e-89SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2H3XR890.0A0A2H3XR89_PHODC; scarecrow-like protein 3
STRINGXP_008787590.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-88scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]