PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s764641g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | C3H | ||||||||
Protein Properties | Length: 192aa MW: 21311.1 Da PI: 8.9155 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 41.6 | 2.1e-13 | 33 | 59 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykte+Cr + + G+C+yG++C++aHg+ PDK_30s764641g001 33 YKTEICRSWDELGFCRYGSKCQYAHGK 59 9************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-18 | 28 | 63 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.04E-10 | 31 | 63 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.8E-8 | 32 | 59 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.69 | 32 | 60 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.0E-10 | 33 | 59 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MYKTPVKVEV EEDVLVMDGV LVTDSESARP SLYKTEICRS WDELGFCRYG SKCQYAHGKE 60 ELRGTRSTRP KSEVGGQSGK SVPIAGSYAY RNRFRYHPSA FSSSASATTR AIAAPAAKAT 120 IMRAEVGSTA VAAPTVSPRR SLSEPSFIWP PTQEEEAYIN QVLYGPSQRR RLPVFCEICP 180 QYRSWAVAQF DP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008811573.1 | 1e-110 | zinc finger CCCH domain-containing protein 9-like | ||||
Refseq | XP_008811574.1 | 1e-110 | zinc finger CCCH domain-containing protein 9-like | ||||
TrEMBL | A0A2H3ZC22 | 1e-109 | A0A2H3ZC22_PHODC; zinc finger CCCH domain-containing protein 9-like | ||||
STRING | XP_008811573.1 | 1e-109 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP29445 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 6e-10 | C3H family protein |