PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s764621g003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 181aa MW: 19447.6 Da PI: 9.6162 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 53.2 | 3.7e-17 | 19 | 62 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +i n + fskRr+gi+KKA EL vLC++++avi +s+ gk PDK_30s764621g003 19 PIRNRDALYACFSKRRKGIFKKAGELAVLCGIQAAVITLSPGGK 62 56777777889******************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 19.189 | 10 | 70 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.6E-20 | 10 | 69 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.42E-23 | 11 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-10 | 12 | 32 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.7E-18 | 20 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-10 | 32 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-10 | 47 | 68 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MEIARKRCGK GRRKIAMEPI RNRDALYACF SKRRKGIFKK AGELAVLCGI QAAVITLSPG 60 GKPMSFGHPS ADAVIDRYLG APLGQDLAAS DEPPSCLDRK PGVPPGGQFW WVDSIHLLDL 120 GDLETIHTSM ETIQRAILRK ANVLASARAA LAGVLAGIQP LAMMNGSDRD PDLYVPSWGG 180 N |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | XP_008796509.1 | 1e-126 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-23 | AGAMOUS-like 62 |