PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s764621g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | ARF | ||||||||
Protein Properties | Length: 670aa MW: 74315.2 Da PI: 7.9479 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 79.7 | 3.1e-25 | 93 | 194 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt sd++++g +++pk++a+e+ ++++ + +l+ +d++g +W++++i+r++++r++lt+GW+ Fv+a++L +gD ++F PDK_30s764621g002 93 FCKILTASDTSTHGGFSVPKRHADEClppldmtQQPPVQ--ELVAKDLHGVEWSFRHIFRGQPKRHLLTTGWSTFVNAKKLVAGDAFIFL-- 180 99****************************975555444..8************************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 +++++el+v+v+r+ PDK_30s764621g002 181 RSENGELRVGVRRA 194 4589999****996 PP | |||||||
2 | Auxin_resp | 92.8 | 5.7e-31 | 219 | 299 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 a+ha++t+++F+v+Y Pr ++eFv++++++++++k+++s+G +++m+fe+e+ +e r++Gt+++++d+dp Wp+S+Wr+ PDK_30s764621g002 219 ASHAITTGTMFSVYYWPRR-SPEFVIPYNQYVESTKNNYSIGRKVRMKFEGEEDQEERITGTIISIEDTDPATWPGSEWRCF 299 789***************7.89**********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.35E-40 | 86 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-42 | 86 | 206 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.77E-23 | 91 | 193 | No hit | No description |
Pfam | PF02362 | 4.0E-23 | 93 | 194 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.1E-25 | 93 | 195 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.437 | 93 | 195 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.1E-29 | 219 | 300 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 670 aa Download sequence Send to blast |
MATLIPSYGA LVPVPSLPFL LSGRRSSTFL RVTWSRLRLT QIKRTTGNCQ STAERDTDEV 60 FVHATLLPEH KDEGVSRNKA VRTSIAKPCV RSFCKILTAS DTSTHGGFSV PKRHADECLP 120 PLDMTQQPPV QELVAKDLHG VEWSFRHIFR GQPKRHLLTT GWSTFVNAKK LVAGDAFIFL 180 RSENGELRVG VRRAMRQHNS ASASVISGQS MQLGLLASAS HAITTGTMFS VYYWPRRSPE 240 FVIPYNQYVE STKNNYSIGR KVRMKFEGEE DQEERITGTI ISIEDTDPAT WPGSEWRCFK 300 VHWDDTSTII RPQRVSPWNV TPFVAAAAQP PFVPRSKRRA THLPSPPDPS ALIRDGPLKV 360 SNEPAPRLCG VLQGQENLVP ALGYIGDYLE QGTAHKILSS QRIPPSSPNA GRSNESINSH 420 REMGLEDWTC SLRPQPCFHE TYANGGISET SWLDSYWQRM LPTSIDLGAS RAKPNRFQDM 480 EVFKSRDTVE NPTTEPIAMS SSLCKEHMSP NGFKEVEKSM YLETGEPSGV KPVSMIKIFG 540 VELFENHVGP IMSHVAYSDG LPISYNALPA TVPHMALSEP DMFSEPSKST KPSECSVSDG 600 FLAQSSTNQP VTARSCTKVH KLGTALGRSV DLSRFDGYES LIVELDHMFE FKGGLADRGS 660 GWQEILLHGA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-112 | 48 | 323 | 79 | 355 | Auxin response factor 1 |
4ldw_A | 1e-112 | 48 | 323 | 79 | 355 | Auxin response factor 1 |
4ldw_B | 1e-112 | 48 | 323 | 79 | 355 | Auxin response factor 1 |
4ldx_A | 1e-112 | 48 | 323 | 79 | 355 | Auxin response factor 1 |
4ldx_B | 1e-112 | 48 | 323 | 79 | 355 | Auxin response factor 1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008813740.1 | 0.0 | auxin response factor 24-like isoform X2 | ||||
TrEMBL | A0A2H3ZHU2 | 0.0 | A0A2H3ZHU2_PHODC; Auxin response factor | ||||
STRING | XP_008813739.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1178 | 36 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.4 | 1e-130 | auxin response factor 2 |