PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s764621g002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ARF
Protein Properties Length: 670aa    MW: 74315.2 Da    PI: 7.9479
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s764621g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.73.1e-2593194199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++pk++a+e+       ++++ +  +l+ +d++g +W++++i+r++++r++lt+GW+ Fv+a++L +gD ++F   
  PDK_30s764621g002  93 FCKILTASDTSTHGGFSVPKRHADEClppldmtQQPPVQ--ELVAKDLHGVEWSFRHIFRGQPKRHLLTTGWSTFVNAKKLVAGDAFIFL-- 180
                        99****************************975555444..8************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        +++++el+v+v+r+
  PDK_30s764621g002 181 RSENGELRVGVRRA 194
                        4589999****996 PP

2Auxin_resp92.85.7e-31219299182
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                        a+ha++t+++F+v+Y Pr  ++eFv++++++++++k+++s+G +++m+fe+e+ +e r++Gt+++++d+dp  Wp+S+Wr+ 
  PDK_30s764621g002 219 ASHAITTGTMFSVYYWPRR-SPEFVIPYNQYVESTKNNYSIGRKVRMKFEGEEDQEERITGTIISIEDTDPATWPGSEWRCF 299
                        789***************7.89**********************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-4086221IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-4286206IPR015300DNA-binding pseudobarrel domain
CDDcd100174.77E-2391193No hitNo description
PfamPF023624.0E-2393194IPR003340B3 DNA binding domain
SMARTSM010193.1E-2593195IPR003340B3 DNA binding domain
PROSITE profilePS5086313.43793195IPR003340B3 DNA binding domain
PfamPF065075.1E-29219300IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MATLIPSYGA LVPVPSLPFL LSGRRSSTFL RVTWSRLRLT QIKRTTGNCQ STAERDTDEV  60
FVHATLLPEH KDEGVSRNKA VRTSIAKPCV RSFCKILTAS DTSTHGGFSV PKRHADECLP  120
PLDMTQQPPV QELVAKDLHG VEWSFRHIFR GQPKRHLLTT GWSTFVNAKK LVAGDAFIFL  180
RSENGELRVG VRRAMRQHNS ASASVISGQS MQLGLLASAS HAITTGTMFS VYYWPRRSPE  240
FVIPYNQYVE STKNNYSIGR KVRMKFEGEE DQEERITGTI ISIEDTDPAT WPGSEWRCFK  300
VHWDDTSTII RPQRVSPWNV TPFVAAAAQP PFVPRSKRRA THLPSPPDPS ALIRDGPLKV  360
SNEPAPRLCG VLQGQENLVP ALGYIGDYLE QGTAHKILSS QRIPPSSPNA GRSNESINSH  420
REMGLEDWTC SLRPQPCFHE TYANGGISET SWLDSYWQRM LPTSIDLGAS RAKPNRFQDM  480
EVFKSRDTVE NPTTEPIAMS SSLCKEHMSP NGFKEVEKSM YLETGEPSGV KPVSMIKIFG  540
VELFENHVGP IMSHVAYSDG LPISYNALPA TVPHMALSEP DMFSEPSKST KPSECSVSDG  600
FLAQSSTNQP VTARSCTKVH KLGTALGRSV DLSRFDGYES LIVELDHMFE FKGGLADRGS  660
GWQEILLHGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1124832379355Auxin response factor 1
4ldw_A1e-1124832379355Auxin response factor 1
4ldw_B1e-1124832379355Auxin response factor 1
4ldx_A1e-1124832379355Auxin response factor 1
4ldx_B1e-1124832379355Auxin response factor 1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008813740.10.0auxin response factor 24-like isoform X2
TrEMBLA0A2H3ZHU20.0A0A2H3ZHU2_PHODC; Auxin response factor
STRINGXP_008813739.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.41e-130auxin response factor 2