PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s764071g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family G2-like
Protein Properties Length: 288aa    MW: 32323.4 Da    PI: 9.658
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s764071g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.65.2e-32169222255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        pr+rWt++LH+rF++ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  PDK_30s764071g001 169 PRMRWTTTLHARFIHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 222
                        9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.68E-15166223IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-28167223IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-23169223IPR006447Myb domain, plants
PfamPF002491.2E-7170221IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MELFPSQPDL SLHISPPNSN PTPSWSKADE NMDLGFWQRA IDSTTTNHHS ITTLSMAKAE  60
KTAFELSLAH PSVTDSTTMS NNLLQLPPHH HHPLVHEGYH QVLGLTRPIR GIPVYQHQPN  120
SFPLVPRLQQ QHLCDSSSTT SFAPFVLQGA SRSRYLPSRF PLKRSMRAPR MRWTTTLHAR  180
FIHAVELLGG HERATPKSVL ELMDVKDLTL AHVKSHLQMY RTMKNTDKPA VSPGQSDGFE  240
NGSTGESSID NLLICNIRRA EPSVQHGRPS THHGTNYSGQ WINSSRNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-16170224458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-16170224458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-16170224458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-16170224458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-16170224458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-16170224458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-16170224458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-16170224458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017696288.20.0probable transcription factor KAN2
TrEMBLA0A2H3ZJF90.0A0A2H3ZJF9_PHODC; probable transcription factor KAN2
STRINGXP_008778201.11e-158(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47213665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.14e-54G2-like family protein