PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s763941g003
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NF-YB
Protein Properties Length: 155aa    MW: 16966.1 Da    PI: 5.9854
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s763941g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB180.51.4e-5621113193
              NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                        vreqdr+lPian+srimkk+lPan+ki+kdaket+qecvsefisfvtseasdkcqrekrktingddllwa+atlGfedyv+plk+yl+kyre
  PDK_30s763941g003  21 VREQDRLLPIANISRIMKKALPANGKIAKDAKETIQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYVDPLKLYLQKYRE 112
                        69*****************************************************************************************9 PP

              NF-YB  93 l 93 
                         
  PDK_30s763941g003 113 G 113
                        5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.107.2E-5416122IPR009072Histone-fold
SuperFamilySSF471132.02E-3924115IPR009072Histone-fold
PfamPF008082.7E-282791IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.0E-225573No hitNo description
PROSITE patternPS0068505874IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.0E-227492No hitNo description
PRINTSPR006153.0E-2293111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MGVGMDLGHE SGGDQSPRSN VREQDRLLPI ANISRIMKKA LPANGKIAKD AKETIQECVS  60
EFISFVTSEA SDKCQREKRK TINGDDLLWA MATLGFEDYV DPLKLYLQKY REGDSKLSAK  120
GGDGSVKKEG GGVQGRTQVG TSTQGEYQVS FFDLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B7e-4920112294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A7e-4920112294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792219.15e-94nuclear transcription factor Y subunit B-like
RefseqXP_008792227.15e-94nuclear transcription factor Y subunit B-like
RefseqXP_008792234.15e-94nuclear transcription factor Y subunit B-like
RefseqXP_008792242.15e-94nuclear transcription factor Y subunit B-like
SwissprotQ8VYK42e-72NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A2H3Y2161e-92A0A2H3Y216_PHODC; nuclear transcription factor Y subunit B-like
STRINGXP_008792219.12e-93(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.31e-68nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]