PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s762671g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 1125aa MW: 129438 Da PI: 8.2544

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s762671g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.8	3.6e-23	134	221	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YAk++GFs+rk++ +++ +g i r +vC keg+r ++k++ + ++++ +rtgC a l++k +k+gk++vt++e HnH+l+ PDK_30s762671g002 134 QFYDNYAKRIGFSIRKNRLNRR-SSGVISLRVYVCHKEGFRGNKKEE-WEVKNPKLYERTGCLAALTLKITKNGKYRVTDFEARHNHPLV 221 6**************99997.8999************9999.99999*********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-20	134	221	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.8E-17	340	400	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.053	575	611	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.4E-6	577	610	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.3E-4	586	613	IPR006564	Zinc finger, PMZ-type
Gene3D	G3DSA:3.10.20.90	5.7E-19	744	820	No hit	No description
SuperFamily	SSF54236	6.54E-10	744	820	IPR029071	Ubiquitin-related domain
Pfam	PF14560	3.2E-17	747	820	IPR000626	Ubiquitin domain
SuperFamily	SSF74924	1.03E-20	886	988	IPR000938	CAP Gly-rich domain
Gene3D	G3DSA:2.30.30.190	1.2E-12	937	987	IPR000938	CAP Gly-rich domain
Pfam	PF01302	1.9E-9	944	987	IPR000938	CAP Gly-rich domain
SMART	SM01052	2.4E-7	944	997	IPR000938	CAP Gly-rich domain
PROSITE profile	PS50245	9.707	964	987	IPR000938	CAP Gly-rich domain
Gene3D	G3DSA:2.30.30.190	3.7E-4	1055	1077	IPR000938	CAP Gly-rich domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1125 aa Download sequence Send to blast
MGLGTTIVGK IRRLNRIRGS RLSKKLNSDA KSLPFWLTLL LGLRLYIYFG FRRDFFQLEL 60 YWAFEREKMS EPNPPPKDGA DESWVPSLYL FKTRYWAFER EKMSEPNPPS KDGADESWVP 120 KVGMEFESEV DAYQFYDNYA KRIGFSIRKN RLNRRSSGVI SLRVYVCHKE GFRGNKKEEW 180 EVKNPKLYER TGCLAALTLK ITKNGKYRVT DFEARHNHPL VIPNKAHMIK WRRISKDRGV 240 VAEESGMIPR VADEVMNGHA GGHQHLIHPS QAYKNYLQSN RASAVVLGDA GALLQYVQER 300 QIDDPSFFYA VQLDKEDRVA NIFWADGLSI IDYDYFGDAV CFDTTYRSNN YGRPFAQFIG 360 VNHHMQMVFF GAALLYNETT ESFKWLFETF KAAMSGKQPK GSKTFALDFS KCIYEIEEEE 420 EFQSSWKEML ETYDLKDNQW LAKLYEDREK WALPYSRHIF CADMKSTLRN EGLSAELKQW 480 LCPELDLLQF LNHYEKAIDG RRHAELQADF QACQISPTIP PTRMLRQAAN IYTPVVFKMF 540 QREFEMSMDC LVYGGGELGP IADYKVAAEG DPTEYVVRVD ISDGTIICSC KKFEFMGIQC 600 RHVLKVLDVI NIKELPQRYI LKRWRKDAKA GSTRDNCEFA FIGDSTSSKA KRYSSLCRIF 660 NKIAARAAES LEAYTLIEGH LDQLMDHTQR LVNCFYSSTF TKIQIKPISS FKVRAVGEAL 720 EGPREGRGKE GSNQMASRLQ LPSDDAVDLV VTHANIKSFS SHVRFSLETP VESAKEKLWR 780 KCGTSVDSMR LELYDDAGSK VCDLSDNLRP LGFYSPQNGL NPISRLIEMQ HREKVRQGNE 840 VVFVTQVIHD SQFHAMILIA STSYIGLTEM VIWILDLDPS SVTSGGWLDD TSLVEKYKIS 900 EEAYNKLDRN FRKFKEKMIS QNPPSGESKL ADSYMEDLCA NIKVGDRCEV EPGGKRGVVK 960 FVGRAEALGP GFWVGIQYDE PLGKHDGMGF WSPIAVKLSP MWERKLGWLS LFKRSYGPQF 1020 GQFRSIQIWI NLWFLFFVDP LFIHKALPVD LWFRVKGIRY FQCLPQHGAI LRPDKVKGLN 1080 NWGRKKSGTL ISLYFKCTVT VWYDLSGLLQ VGDYPERDPF DEEEI

Sequence ? help Back to Top

Protein Sequence Length: 1125 aa Download sequence Send to blast

MGLGTTIVGK IRRLNRIRGS RLSKKLNSDA KSLPFWLTLL LGLRLYIYFG FRRDFFQLEL  60
YWAFEREKMS EPNPPPKDGA DESWVPSLYL FKTRYWAFER EKMSEPNPPS KDGADESWVP  120
KVGMEFESEV DAYQFYDNYA KRIGFSIRKN RLNRRSSGVI SLRVYVCHKE GFRGNKKEEW  180
EVKNPKLYER TGCLAALTLK ITKNGKYRVT DFEARHNHPL VIPNKAHMIK WRRISKDRGV  240
VAEESGMIPR VADEVMNGHA GGHQHLIHPS QAYKNYLQSN RASAVVLGDA GALLQYVQER  300
QIDDPSFFYA VQLDKEDRVA NIFWADGLSI IDYDYFGDAV CFDTTYRSNN YGRPFAQFIG  360
VNHHMQMVFF GAALLYNETT ESFKWLFETF KAAMSGKQPK GSKTFALDFS KCIYEIEEEE  420
EFQSSWKEML ETYDLKDNQW LAKLYEDREK WALPYSRHIF CADMKSTLRN EGLSAELKQW  480
LCPELDLLQF LNHYEKAIDG RRHAELQADF QACQISPTIP PTRMLRQAAN IYTPVVFKMF  540
QREFEMSMDC LVYGGGELGP IADYKVAAEG DPTEYVVRVD ISDGTIICSC KKFEFMGIQC  600
RHVLKVLDVI NIKELPQRYI LKRWRKDAKA GSTRDNCEFA FIGDSTSSKA KRYSSLCRIF  660
NKIAARAAES LEAYTLIEGH LDQLMDHTQR LVNCFYSSTF TKIQIKPISS FKVRAVGEAL  720
EGPREGRGKE GSNQMASRLQ LPSDDAVDLV VTHANIKSFS SHVRFSLETP VESAKEKLWR  780
KCGTSVDSMR LELYDDAGSK VCDLSDNLRP LGFYSPQNGL NPISRLIEMQ HREKVRQGNE  840
VVFVTQVIHD SQFHAMILIA STSYIGLTEM VIWILDLDPS SVTSGGWLDD TSLVEKYKIS  900
EEAYNKLDRN FRKFKEKMIS QNPPSGESKL ADSYMEDLCA NIKVGDRCEV EPGGKRGVVK  960
FVGRAEALGP GFWVGIQYDE PLGKHDGMGF WSPIAVKLSP MWERKLGWLS LFKRSYGPQF  1020
GQFRSIQIWI NLWFLFFVDP LFIHKALPVD LWFRVKGIRY FQCLPQHGAI LRPDKVKGLN  1080
NWGRKKSGTL ISLYFKCTVT VWYDLSGLLQ VGDYPERDPF DEEEI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2kj6_A	4e-26	747	820	15	88	Tubulin folding cofactor B

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026663036.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	A0A3Q0I7Q5	0.0	A0A3Q0I7Q5_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X2
STRING	XP_008799178.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-107	FAR1-related sequence 5