PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s761251g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 358aa    MW: 39773.1 Da    PI: 4.6537
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s761251g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-171663148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd +l  +++++G g+W++ +++ g+ R++k+c++rw +yl
  PDK_30s761251g004 16 KGSWTPEEDVRLMAYIQKYGHGNWRALPKRAGLLRCGKSCRLRWMNYL 63
                       799*****************************99************97 PP
2Myb_DNA-binding51.72e-1669114148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++++eE+e +++++ +lG++ W++Ia++++ gRt++++k+ w+++l
  PDK_30s761251g004  69 RGNFSKEEEETIIKLHGLLGNK-WSKIASCLP-GRTDNEIKNVWNTHL 114
                        89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-24766IPR009057Homeodomain-like
PROSITE profilePS5129416.641163IPR017930Myb domain
SuperFamilySSF466899.38E-3113110IPR009057Homeodomain-like
SMARTSM007171.7E-131565IPR001005SANT/Myb domain
PfamPF002494.4E-161663IPR001005SANT/Myb domain
CDDcd001674.00E-101863No hitNo description
PROSITE profilePS5129424.60664118IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2667118IPR009057Homeodomain-like
SMARTSM007178.6E-1568116IPR001005SANT/Myb domain
PfamPF002491.0E-1469114IPR001005SANT/Myb domain
CDDcd001673.55E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGRGRAPCCE KVGLNKGSWT PEEDVRLMAY IQKYGHGNWR ALPKRAGLLR CGKSCRLRWM  60
NYLRPDIKRG NFSKEEEETI IKLHGLLGNK WSKIASCLPG RTDNEIKNVW NTHLKKRLLS  120
KERSQKTDKL EETPSLSSST TSHSCSDQVE GRSDSEHTDP SVDSTNPSED KIEIPTELGM  180
DMWVMLEDAL PSSPRKSDTE DKNMPELHLE QNSLSDSSAT NGSSSGSGRG QAVDDIHDHP  240
REAEKDPLEL PDVAIEPELW DMIQDGDAGL FSQGVGAMVE LGVHGNPESL DEEPSRGEGS  300
RIWVEYLEKE LGLWGASDDN QESPMGPWAE MEGDPVTCYF QKGPSSSSPV DLHDLKVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-271411825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008800091.10.0myb-related protein Zm1-like
TrEMBLA0A2H3YL230.0A0A2H3YL23_PHODC; myb-related protein Zm1-like
STRINGXP_008800091.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21543798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.15e-67myb domain protein 63