PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s760891g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

C2H2

Protein Properties

Length: 487aa MW: 53196.8 Da PI: 9.0792

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s760891g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.4e-05	63	85	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PDK_30s760891g001 63 FVCEICNKGFQRDQNLQLHRRGH 85 89*******************88 PP
2	zf-C2H2	11.3	0.0011	139	161	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + PDK_30s760891g001 139 WKCDKCSKKYAVQSDWKAHSKIC 161 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.6E-5	62	85	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.8E-7	62	85	No hit	No description
PROSITE profile	PS50157	10.949	63	85	IPR007087	Zinc finger, C2H2
Pfam	PF12171	7.7E-5	63	85	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	63	85	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	65	85	IPR007087	Zinc finger, C2H2
SMART	SM00355	110	104	134	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.2E-4	127	160	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.8E-7	134	159	No hit	No description
SMART	SM00355	150	139	159	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MEENMSNLTS ASREASVTSN QQSSFASPHP APVKKKRNLP GNPDPDAEVM ALSPKTLMAT 60 NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRSSKEVK KKVYICPEVT CVHHDPSRAL 120 GDLTGIKKHF SRKHGEKKWK CDKCSKKYAV QSDWKAHSKI CGTREYRCDC GTLFSRRDSF 180 ITHRAFCDAL AEESARAMTA NPLANHPTLL FSQPTSSHDP SPLPHTALQA QFPQLMRATE 240 ANTNIIGTHG LQELSPKREQ HFSMRTDIPP WLACQGPTSL NPLDLHSSIY STRLEQQYSR 300 ENPAGPPPPL PPPFQGPSGA ASSHMSATAL LQKAAQMGAT MSRPPRHDQM ATHTANASVA 360 NTTAGFGQEM AGGGGGGFGH GSAPSLLQDM MLNSLPSAPC FSGSFEEAFG GMLGAKREEN 420 SRMEGIARSH GRNEEGGSGG GNDGLTRDFL GLRAFSHRDF INMAGLNSCM SSSSYEQPQQ 480 NKQPWHG

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MEENMSNLTS ASREASVTSN QQSSFASPHP APVKKKRNLP GNPDPDAEVM ALSPKTLMAT  60
NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRSSKEVK KKVYICPEVT CVHHDPSRAL  120
GDLTGIKKHF SRKHGEKKWK CDKCSKKYAV QSDWKAHSKI CGTREYRCDC GTLFSRRDSF  180
ITHRAFCDAL AEESARAMTA NPLANHPTLL FSQPTSSHDP SPLPHTALQA QFPQLMRATE  240
ANTNIIGTHG LQELSPKREQ HFSMRTDIPP WLACQGPTSL NPLDLHSSIY STRLEQQYSR  300
ENPAGPPPPL PPPFQGPSGA ASSHMSATAL LQKAAQMGAT MSRPPRHDQM ATHTANASVA  360
NTTAGFGQEM AGGGGGGFGH GSAPSLLQDM MLNSLPSAPC FSGSFEEAFG GMLGAKREEN  420
SRMEGIARSH GRNEEGGSGG GNDGLTRDFL GLRAFSHRDF INMAGLNSCM SSSSYEQPQQ  480
NKQPWHG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	9e-35	135	196	3	64	Zinc finger protein JACKDAW
5b3h_F	9e-35	135	196	3	64	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008782522.1	0.0	protein indeterminate-domain 7-like
Swissprot	Q9LRW7	1e-125	IDD11_ARATH; Protein indeterminate-domain 11
TrEMBL	A0A2H3XE94	0.0	A0A2H3XE94_PHODC; protein indeterminate-domain 7-like
STRING	XP_008782520.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-107	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]