PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s759601g003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 199aa MW: 22542.3 Da PI: 10.1216 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.7 | 2e-18 | 123 | 177 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t+eq Lee F ++++++ ++++ LAk+l+L rqV vWFqNrRa+ k PDK_30s759601g003 123 RKKLRLTREQSALLEERFTEHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTK 177 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 107.8 | 8e-35 | 123 | 196 | 1 | 74 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalk 74 +kk+rl++eq++lLEe F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr+y++l+ PDK_30s759601g003 123 RKKLRLTREQSALLEERFTEHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEILKRRYKTLT 196 69********************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.362 | 119 | 179 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.8E-15 | 121 | 183 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-18 | 121 | 188 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 7.4E-16 | 123 | 177 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-17 | 123 | 177 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.16E-13 | 123 | 180 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 154 | 177 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MSQDEMCDTG LALGLGIGGR SSSSSNLHRR REPYSTFSIS TPYKPSLTLG LSNDVYGATA 60 MPKAESHKTN EESRPARPSS PHSTLSTAYP PSVKREKDAG SEEAEVVRVF SRASDEEEDA 120 SARKKLRLTR EQSALLEERF TEHSTLNPKQ KQALAKQLNL RPRQVEVWFQ NRRARTKLKQ 180 TEVDCEILKR RYKTLTDFR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 171 | 179 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010939328.1 | 1e-108 | homeobox-leucine zipper protein HAT9 | ||||
Swissprot | P46603 | 1e-47 | HAT9_ARATH; Homeobox-leucine zipper protein HAT9 | ||||
TrEMBL | A0A2H3XXM3 | 4e-88 | A0A2H3XXM3_PHODC; homeobox-leucine zipper protein HAT9-like | ||||
STRING | XP_008785763.1 | 1e-124 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2055 | 36 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22800.1 | 3e-45 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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