PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s758851g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HD-ZIP
Protein Properties Length: 749aa    MW: 82482.2 Da    PI: 7.1832
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s758851g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.5e-191775357
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  PDK_30s758851g001 17 KYVRYTPEQVEALERLYHDCPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                       5679*****************************************************97 PP
2START185.72.4e-581613692205
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v m+++  v+e+l+d++ W ++++++++++v+  g  g++
  PDK_30s758851g001 161 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGMEPT-KVAEILKDRPSWFHDCRSVDVINVLPAGnsGTI 251
                        789*******************************************************.8888888888*********************** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        +l +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S++s+q  p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ +++++
  PDK_30s758851g001 252 ELLYMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLNSTQGGPSmppVQPFVRAEMLPSGYLIRPCEGGGSIMHIVDHMDLEPWSVPE 343
                        ********************************************9998888899************************************** PP

                        HHHHHHHHHHHHHHHHHHHHTXXXXX CS
              START 180 llrslvksglaegaktwvatlqrqce 205
                        +lr+l++s+++ ++kt++a+l+++++
  PDK_30s758851g001 344 VLRPLYESSMVLAQKTTMAALRHLRQ 369
                        *********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.581276IPR001356Homeobox domain
SMARTSM003891.1E-161480IPR001356Homeobox domain
CDDcd000864.69E-171577No hitNo description
SuperFamilySSF466895.13E-171680IPR009057Homeodomain-like
PfamPF000461.6E-161775IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-181975IPR009057Homeodomain-like
CDDcd146869.94E-769108No hitNo description
PROSITE profilePS5084826.098151365IPR002913START domain
CDDcd088754.05E-82155370No hitNo description
Gene3DG3DSA:3.30.530.207.1E-25158366IPR023393START-like domain
SuperFamilySSF559618.52E-40160371No hitNo description
SMARTSM002341.2E-44160370IPR002913START domain
PfamPF018523.8E-56161369IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MAVSSGKEGK TGMDPGKYVR YTPEQVEALE RLYHDCPKPS SMRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VYENGYFRQQ  120
SRNAALTTPD TSCESVVTSG QHHLTAQRPP RDASPAGLMS IAEETLTEFL SKATGTAVEW  180
VQMPGMKPGP DSIGIVAISH GCTGVAARAC GLVGMEPTKV AEILKDRPSW FHDCRSVDVI  240
NVLPAGNSGT IELLYMQLYA PTTLAPARDF WLLRYTSVLE DGSLVVCERS LNSTQGGPSM  300
PPVQPFVRAE MLPSGYLIRP CEGGGSIMHI VDHMDLEPWS VPEVLRPLYE SSMVLAQKTT  360
MAALRHLRQI VHEVSQSTVT GWGRRPAALR ALSQRLSRGF NEALNGFADD GWSMIGSDGT  420
DDVTILVNSS PSRMMGLNLG FTNGFPSLSN AVLCAKASML LQSSLFLQNV SPAMLLRFLR  480
EHRSEWADSN IDAYSAAAVR ASPCTLPMSR IGCVGGQVIL PLAHTLEHEE FLEVLKLENI  540
GRSQDALMPR DLFLLQLCNG VDENAVGTCS ELVFAPIDAS FADDAPLLPS GFRIIPLDSV  600
MESSSPNRTL DLASTLEIGS TGNRVSGNYS GNSTSTRSVM TIAFQFAFES HLQENVASMA  660
RQYIRNIISS VQRVALALSP SHLGSHGGLR SPPGTPEAIT LARWICYSYR SFSKCMIPFS  720
LVPTDTQYAS SSRTVPHTDT VIEWYWYRV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008791633.10.0homeobox-leucine zipper protein ATHB-15-like
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A2H3Y0I20.0A0A2H3Y0I2_PHODC; homeobox-leucine zipper protein ATHB-15-like
STRINGXP_008791633.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.30.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]