PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s758801g007 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | C2H2 | ||||||||
Protein Properties | Length: 227aa MW: 24342.3 Da PI: 8.2899 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.6 | 0.00085 | 62 | 84 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H PDK_30s758801g007 62 YECKTCSKCFPSFQALGGHRASH 84 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 14.2 | 0.00013 | 140 | 162 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H PDK_30s758801g007 140 HECSICGSEFSSGQALGGHMRRH 162 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.73E-9 | 61 | 84 | No hit | No description |
Pfam | PF13912 | 1.4E-11 | 61 | 86 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.18 | 62 | 84 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.159 | 62 | 89 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 64 | 84 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.73E-9 | 135 | 162 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.5E-4 | 138 | 162 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 6.5E-12 | 139 | 163 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.764 | 140 | 162 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.02 | 140 | 162 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 142 | 162 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MANCLILLAQ GRALDTGPKP QIPREEGAAD PANSNGATEK FTSRRFAETT TTTNGKAGFY 60 VYECKTCSKC FPSFQALGGH RASHKKPKLA IPTTGTEDKK AAVVIDGDSL QISMNSFSKS 120 IMAATNANSN STSNSKPKVH ECSICGSEFS SGQALGGHMR RHRPLSIPET SETKKERNVL 180 SLDLNLPAPS DDDRGEFPKS PSDVVAFPFE SKQPLVFSAS ALVDCHY |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00487 | DAP | Transfer from AT5G04390 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008787454.1 | 1e-168 | zinc finger protein ZAT5 | ||||
TrEMBL | A0A2H3XQY6 | 1e-167 | A0A2H3XQY6_PHODC; zinc finger protein ZAT5 | ||||
STRING | XP_008787454.1 | 1e-167 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2013 | 32 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 5e-52 | C2H2 family protein |