PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s755971g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

MYB_related

Protein Properties

Length: 537aa MW: 60541.7 Da PI: 3.9735

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s755971g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.5	6.3e-08	261	309	2	47
SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 ++WT+eE++l+ d+v + W+ ++ ++ R k+++s+++++ PDK_30s755971g002 261 KKWTEEEEQLFQDVVLINPASlgknFWNHLPQVLP-SRNSKELVSYYFNV 309 58***********7765555555******.*********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0049	259	312	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-5	261	309	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.54E-5	261	310	IPR009057	Homeodomain-like
CDD	cd00167	3.18E-7	262	310	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.6E-4	262	308	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.051	262	310	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence Send to blast
MVFKHNKHPF ADIDPNQLAY EDLRQFDYDG QVASFEEISS FRGIPQKSLT SVDSDRDLEN 60 EEVAAVPEDS AKEATSSLMP WIICSRSEEV TNLDSGVSVH FLPSYFEEYQ TAQGFHQVEE 120 LYSPLFDYPP RKPVAVGPNH QADIPEWRSR DFRNSFKDSD DCVSSPLTSR TCSSSAVPHM 180 IDEDDSDKWV GTCVMPMPCS DSLASEIRAV HCKTDCSCLD EGSIQCVRQH VIEAREKLRR 240 MLGQDRFEEL GFDDMGEDVA KKWTEEEEQL FQDVVLINPA SLGKNFWNHL PQVLPSRNSK 300 ELVSYYFNVF MLRKRAEQNR SDPLNVDSDN DEWQESDDGE FATTEEDEED SVVESLANQG 360 DPACGKDGPE ATDINEDVDD EDECEDYPIA DKNEEGLCGV SERCVSNKSN FCPTVQLIDK 420 NLQNGVEQDV RDDSCMSFEG QQNGADSCGG AADNLDMQHS LIEDHDNLLE EYRNDGTSDM 480 TDHEFFDGHC DPKTWDIIYN RGAGKDDFLS TCNVIEEVFG NGAWENDANN NHGVSQP

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence Send to blast

MVFKHNKHPF ADIDPNQLAY EDLRQFDYDG QVASFEEISS FRGIPQKSLT SVDSDRDLEN  60
EEVAAVPEDS AKEATSSLMP WIICSRSEEV TNLDSGVSVH FLPSYFEEYQ TAQGFHQVEE  120
LYSPLFDYPP RKPVAVGPNH QADIPEWRSR DFRNSFKDSD DCVSSPLTSR TCSSSAVPHM  180
IDEDDSDKWV GTCVMPMPCS DSLASEIRAV HCKTDCSCLD EGSIQCVRQH VIEAREKLRR  240
MLGQDRFEEL GFDDMGEDVA KKWTEEEEQL FQDVVLINPA SLGKNFWNHL PQVLPSRNSK  300
ELVSYYFNVF MLRKRAEQNR SDPLNVDSDN DEWQESDDGE FATTEEDEED SVVESLANQG  360
DPACGKDGPE ATDINEDVDD EDECEDYPIA DKNEEGLCGV SERCVSNKSN FCPTVQLIDK  420
NLQNGVEQDV RDDSCMSFEG QQNGADSCGG AADNLDMQHS LIEDHDNLLE EYRNDGTSDM  480
TDHEFFDGHC DPKTWDIIYN RGAGKDDFLS TCNVIEEVFG NGAWENDANN NHGVSQP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008776476.1	0.0	uncharacterized protein LOC103696583
TrEMBL	A0A2H3X0G4	0.0	A0A2H3X0G4_PHODC; uncharacterized protein LOC103696583
STRING	XP_008776476.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11684	4	6