PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s755021g007
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family FAR1
Protein Properties Length: 808aa    MW: 92024 Da    PI: 7.0884
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s755021g007genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR179.18e-2541127190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        +fY +YA +vGFsvrk    ks rn  + +r +vCs+eg+r ++  +  +++++r+etrtgC a++ +k + +gk+ +++++ +HnH+la
  PDK_30s755021g007  41 EFYVKYAGTVGFSVRKGWWDKSARNV-TRSRVYVCSREGFRPRNVAN--DAKKPRTETRTGCLARMAIKITPSGKYSISEFVADHNHQLA 127
                        6*********************7766.99**************9988..99*************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-2241127IPR004330FAR1 DNA binding domain
PfamPF105516.5E-29225318IPR018289MULE transposase domain
PfamPF044341.3E-5493537IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.039493540IPR007527Zinc finger, SWIM-type
SMARTSM005756.2E-4515542IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 808 aa     Download sequence    Send to blast
MASGTDKRTE AEPAVPAEDV ANLGGEPKVG MVFANEDKAY EFYVKYAGTV GFSVRKGWWD  60
KSARNVTRSR VYVCSREGFR PRNVANDAKK PRTETRTGCL ARMAIKITPS GKYSISEFVA  120
DHNHQLAAPL DVQMLRSQRV LAKVQPEGCQ NTSLIPADYK NYLRSKRMKD MKLGDAGSLL  180
EYLQKMKSEN PSFFYAIQVD ERDQLTNIFW VDAKSMMDYH YFGDVVCFDT AYKTNDYDRP  240
FALFLGVNHH KQIIVFGAAL LYDETIESFK WLFETFKTAM GGRQPRTILT DCCATVSDAV  300
AAVWPGTMHR LCLWQIHQDA SKRLSHVFEG SETFALDISR CLYDCEDEEE FLLAWETMLE  360
RYDLKDNEWL GKLYEEREKW ALVYRREIFC ADIANALRNE NLNTVLKEYL KLETDLLSFF  420
NQYDRLVEER RYAEQQANYQ ANQGTSRIPP LRLLWQAANV YTPAVFEMFK LEFELTVNCT  480
VYSCAEVGTI SQYEVTVKDK TKERSVRFDS ADGTALCSCK KFEFSGVQCC HVLKILDLRN  540
IKELPLQYVL KRWRKDAKVG SIRENHRFAL DGDPKSSIPK RYSSLCQILY KIAAMAAENA  600
EAYSCMESQS DQLLERVERI LQARLLEMPS PSTASKVQPH NLVPNKSNIG ESPRASGKRK  660
KNGDAHHRNQ NGFGSNKRQK GRQGLSDEAE IETRSDELPA SSDEILAQPR NPPNQFFVPS  720
QFMQGPYVSG HQFGLSTVQG FHNMTQFSQM QESSTSLLQQ QPFHGNTQLG QACSAADVQS  780
LQFGGSNPQL GHQSSDQGHY SIPVWDFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1658679RKKNGDAHHRNQNGFGSNKRQK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029116593.10.0protein FAR1-RELATED SEQUENCE 4 isoform X1
RefseqXP_029116595.10.0protein FAR1-RELATED SEQUENCE 4 isoform X1
RefseqXP_029116597.10.0protein FAR1-RELATED SEQUENCE 4 isoform X1
RefseqXP_029116598.10.0protein FAR1-RELATED SEQUENCE 4 isoform X1
TrEMBLA0A2H3X2Y10.0A0A2H3X2Y1_PHODC; protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_008787331.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-117FAR1-related sequence 5