PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s755021g007 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | FAR1 | ||||||||
Protein Properties | Length: 808aa MW: 92024 Da PI: 7.0884 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 79.1 | 8e-25 | 41 | 127 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YA +vGFsvrk ks rn + +r +vCs+eg+r ++ + +++++r+etrtgC a++ +k + +gk+ +++++ +HnH+la PDK_30s755021g007 41 EFYVKYAGTVGFSVRKGWWDKSARNV-TRSRVYVCSREGFRPRNVAN--DAKKPRTETRTGCLARMAIKITPSGKYSISEFVADHNHQLA 127 6*********************7766.99**************9988..99*************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.4E-22 | 41 | 127 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.5E-29 | 225 | 318 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 1.3E-5 | 493 | 537 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 10.039 | 493 | 540 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 6.2E-4 | 515 | 542 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 808 aa Download sequence Send to blast |
MASGTDKRTE AEPAVPAEDV ANLGGEPKVG MVFANEDKAY EFYVKYAGTV GFSVRKGWWD 60 KSARNVTRSR VYVCSREGFR PRNVANDAKK PRTETRTGCL ARMAIKITPS GKYSISEFVA 120 DHNHQLAAPL DVQMLRSQRV LAKVQPEGCQ NTSLIPADYK NYLRSKRMKD MKLGDAGSLL 180 EYLQKMKSEN PSFFYAIQVD ERDQLTNIFW VDAKSMMDYH YFGDVVCFDT AYKTNDYDRP 240 FALFLGVNHH KQIIVFGAAL LYDETIESFK WLFETFKTAM GGRQPRTILT DCCATVSDAV 300 AAVWPGTMHR LCLWQIHQDA SKRLSHVFEG SETFALDISR CLYDCEDEEE FLLAWETMLE 360 RYDLKDNEWL GKLYEEREKW ALVYRREIFC ADIANALRNE NLNTVLKEYL KLETDLLSFF 420 NQYDRLVEER RYAEQQANYQ ANQGTSRIPP LRLLWQAANV YTPAVFEMFK LEFELTVNCT 480 VYSCAEVGTI SQYEVTVKDK TKERSVRFDS ADGTALCSCK KFEFSGVQCC HVLKILDLRN 540 IKELPLQYVL KRWRKDAKVG SIRENHRFAL DGDPKSSIPK RYSSLCQILY KIAAMAAENA 600 EAYSCMESQS DQLLERVERI LQARLLEMPS PSTASKVQPH NLVPNKSNIG ESPRASGKRK 660 KNGDAHHRNQ NGFGSNKRQK GRQGLSDEAE IETRSDELPA SSDEILAQPR NPPNQFFVPS 720 QFMQGPYVSG HQFGLSTVQG FHNMTQFSQM QESSTSLLQQ QPFHGNTQLG QACSAADVQS 780 LQFGGSNPQL GHQSSDQGHY SIPVWDFL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 658 | 679 | RKKNGDAHHRNQNGFGSNKRQK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029116593.1 | 0.0 | protein FAR1-RELATED SEQUENCE 4 isoform X1 | ||||
Refseq | XP_029116595.1 | 0.0 | protein FAR1-RELATED SEQUENCE 4 isoform X1 | ||||
Refseq | XP_029116597.1 | 0.0 | protein FAR1-RELATED SEQUENCE 4 isoform X1 | ||||
Refseq | XP_029116598.1 | 0.0 | protein FAR1-RELATED SEQUENCE 4 isoform X1 | ||||
TrEMBL | A0A2H3X2Y1 | 0.0 | A0A2H3X2Y1_PHODC; protein FAR1-RELATED SEQUENCE 5-like | ||||
STRING | XP_008787331.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-117 | FAR1-related sequence 5 |