PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s752721g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | C3H | ||||||||
Protein Properties | Length: 891aa MW: 98673.8 Da PI: 6.1692 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.9 | 5.7e-06 | 590 | 610 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+f++ G C+ Gd CkF+H+ PDK_30s752721g001 590 YCNFYLM-GRCQQGDLCKFSHD 610 6999999.*************7 PP | |||||||
2 | zf-CCCH | 20.1 | 1.1e-06 | 672 | 692 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++f+ G C++Gd+CkF+H PDK_30s752721g001 672 PCHNFSSKGMCSRGDKCKFSH 692 7******************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 4.19E-6 | 585 | 610 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.371 | 585 | 612 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0014 | 586 | 611 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.5E-4 | 589 | 610 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.314 | 642 | 666 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.17 | 642 | 668 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.68E-5 | 644 | 667 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.892 | 667 | 695 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.17 | 670 | 694 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-6 | 671 | 700 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-4 | 672 | 693 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 891 aa Download sequence Send to blast |
MEDLVRSPAP ELQTLNPRME GFSRSASRTP RRSHLDSASY RTLVRIFSLC LDESLGRPQE 60 SRKDPNPRSD DVPESSCTGK DSIFGRSGDG NVAEEIGRGR KGEGHSGFEG SERGEFGGSE 120 RSQGSACGNP RFDDSSLNGN ISSREELGHE NGTSVELPEA LVFEKLQSGG IKDEASHRME 180 ELGHGSGREE CDQSANGGTQ KALLFTDLEH LLHENINSVE QPGNGELLND IIFDFSGLID 240 NPNDLVCSAG SQDGQRQLGH GELANNELRK DVPLRNTKLA DSKNQNSCSG QGKNHEPQDE 300 SSKIIFSGDK MIYSSEELLH GKMREGHGEC VNDVLTKHMF PDKHMMDGVR HKEIKSVKEL 360 GEVLHEETHC CSDSLMEGSE SRELAIPVLA SEDSGDIEEG EIPGELNISN QDLDMDLDLV 420 HEHAVLEDRN IEEGTTYCGS PKKGDTNMTC LDEGMHSRES NYKDDESAVP IHITKGDIMH 480 VSGDDRYSET QMKKSYSSGM RVDVKRPAVD SEALGLPGEN LGNIISQNKE KPSNHEAVEA 540 RLKRKRGALT EERKAKRKKA KKRKRAQKER EQGVKRLKLQ PISKPKTVKY CNFYLMGRCQ 600 QGDLCKFSHD TTPLTKSQLD AWPPCFELYS QLPLDGTRVA WYYQYEPCTY FARDSCLKGD 660 DCPFDHQLSK YPCHNFSSKG MCSRGDKCKF SHKITTNEAS SSIPIISNSK SPLTSENLNF 720 RKQNTTNSTS IVACGPPKTT TSCTPFPIQK NMEGDTIKPP KIPMRIPNGI RFLSFGKGPS 780 DSINRQHHDN LLLKERKILD QQNQEKFLMD GHKNDTDDIS LAQTSLLKVH SESNVMSGGA 840 AYSAINTLDN KNLKNKSISS VSSVVPGSRS LHSEVSDASK ILEEFLFSGV S |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 541 | 558 | LKRKRGALTEERKAKRKK |
2 | 542 | 561 | KRKRGALTEERKAKRKKAKK |
3 | 543 | 564 | RKRGALTEERKAKRKKAKKRKR |
4 | 556 | 577 | RKKAKKRKRAQKEREQGVKRLK |
5 | 559 | 565 | AKKRKRA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008807156.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
TrEMBL | A0A2H3Z2K6 | 0.0 | A0A2H3Z2K6_PHODC; zinc finger CCCH domain-containing protein 7 | ||||
STRING | XP_008807156.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8838 | 37 | 43 |