PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s749591g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB | ||||||||
Protein Properties | Length: 332aa MW: 36710.6 Da PI: 8.5051 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.7 | 7.1e-15 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l ++v+++G g+W+++ + + R++k+c++rw ++l PDK_30s749591g002 16 KGPWTAVEDAILMEYVRKHGEGSWNAVQKNTELARCGKSCRLRWANHL 63 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 51.5 | 2.4e-16 | 69 | 112 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+++++E++l++++++qlG++ W++ a++++ gRt++++k++w++ PDK_30s749591g002 69 KGAFSPDEELLILRLHAQLGNK-WARMAAHLP-GRTDNEIKNYWNT 112 799*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.787 | 11 | 63 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-22 | 12 | 66 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.74E-29 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-11 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-14 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.81E-10 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 24.658 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-24 | 67 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-15 | 69 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.58E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MTRSDGGGSR DGGLKKGPWT AVEDAILMEY VRKHGEGSWN AVQKNTELAR CGKSCRLRWA 60 NHLRPNLKKG AFSPDEELLI LRLHAQLGNK WARMAAHLPG RTDNEIKNYW NTRIKRRQRA 120 GLPLYPSDIQ RELALKRQRL HRNHPPSTNP LAPILTNNTT ITHFSSPPSS LLDPTGCLST 180 PTSTTFNVPL PPPGHHLPFP SRSMFHPQQP QQQQMEFNFG TFGLNSHPLP PPVFPNKMEL 240 PSTQTFTELP FSGGLLDTLL QEVQAGGDLQ SNGLLPELVS GDQDVKWNHL CVGCASGEGS 300 GCKGVTSPQD GLMESDAKWA DWNWSIGEPC LA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-29 | 14 | 117 | 5 | 107 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008775421.1 | 0.0 | transcription factor MYB101-like | ||||
TrEMBL | A0A2H3WXZ8 | 0.0 | A0A2H3WXZ8_PHODC; transcription factor MYB101-like | ||||
STRING | XP_008775421.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7420 | 37 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.1 | 4e-69 | myb domain protein 101 |