PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s747321g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

M-type_MADS

Protein Properties

Length: 67aa MW: 7572.84 Da PI: 10.9535

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s747321g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	96.8	8.9e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ien + rqvtfskRrng+lKKA+ELSvLCdaevavi+fs++g+lye+ss PDK_30s747321g001 9 KLIENVTSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIVFSPRGRLYEFSS 59 569**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	30.67	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.5E-39	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.08E-36	3	65	No hit	No description
PRINTS	PR00404	5.3E-30	3	23	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.1E-29	3	61	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.5E-27	11	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.3E-30	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.3E-30	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 67 aa Download sequence Send to blast
MVRGKTEMKL IENVTSRQVT FSKRRNGLLK KAFELSVLCD AEVAVIVFSP RGRLYEFSST 60 RSHGTPV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	2e-16	1	60	1	60	Myocyte-specific enhancer factor 2B
1tqe_Q	2e-16	1	60	1	60	Myocyte-specific enhancer factor 2B
1tqe_R	2e-16	1	60	1	60	Myocyte-specific enhancer factor 2B
1tqe_S	2e-16	1	60	1	60	Myocyte-specific enhancer factor 2B
6c9l_A	2e-16	1	60	1	60	Myocyte-specific enhancer factor 2B
6c9l_B	2e-16	1	60	1	60	Myocyte-specific enhancer factor 2B
6c9l_C	2e-16	1	60	1	60	Myocyte-specific enhancer factor 2B
6c9l_D	2e-16	1	60	1	60	Myocyte-specific enhancer factor 2B
6c9l_E	2e-16	1	60	1	60	Myocyte-specific enhancer factor 2B
6c9l_F	2e-16	1	60	1	60	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that regulates root development by controlling meristem size and patterning of the root apical meristem. Regulates auxin transport and gradients in the root meristematic cells via direct regulation of the auxin efflux carrier PIN1 and PIN4 gene expression. Binds specifically to the CArG-box DNA sequences in the promoter regions of PIN1 and PIN4 genes (PubMed:24121311). Involved in the regulation of shoot apical meristem (SAM) cell identities and transitions. Promotes flowering transition and participates in flower meristem maintenance and determinacy. Positively regulates TFL1 and WUS expression. Binds directly to the TFL1 regulatory sequences (PubMed:25636918). {ECO:0000269\|PubMed:24121311}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:24121311}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF207699	6e-90	AF207699.1 Elaeis guineensis agamous-like MADS box protein OPMADS1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008777520.1	4e-35	MADS-box transcription factor 50-like isoform X1
Refseq	XP_026657043.1	4e-35	MADS-box transcription factor 50-like isoform X2
Swissprot	Q38838	2e-33	AGL14_ARATH; Agamous-like MADS-box protein AGL14
TrEMBL	A0A2H3X2X7	9e-34	A0A2H3X2X7_PHODC; MADS-box transcription factor 50-like isoform X1
TrEMBL	A0A3Q0HQS5	9e-34	A0A3Q0HQS5_PHODC; MADS-box transcription factor 50-like isoform X2
STRING	XP_008777520.1	2e-34	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11880.1	1e-35	AGAMOUS-like 14

Publications ? help Back to Top
Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox. Plant Physiol., 2004. 136(1): p. 2621-32 [PMID:15375207] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]