PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s747271g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bHLH

Protein Properties

Length: 676aa MW: 76509.8 Da PI: 5.2336

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s747271g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.6	7e-11	354	465	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...............................................................TT CS HLH 4 ahnerErrRRdriNsafeeLrellPkas............................................................kaps 35 +h +ErrRR+++N++f Lr+l+P + ++ PDK_30s747271g001 354 NHVLAERRRREKLNERFIILRSLVPFVTkkeplhigeeqfivtdvyplrarsavpvpvgvpvaywtgtvrfilepvryepmachnssfMETI 445 7999********************556*******************************************************9999 PP S-STCHHHHHHHHHHHHHHH CS HLH 36 kKlsKaeiLekAveYIksLq 55 ++Ka+iL ++eY+k+L+ PDK_30s747271g001 446 AEMDKASILGDTIEYVKQLR 465 9***************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	4.1E-11	23	61	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	13.192	350	464	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.55E-15	352	378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-8	354	464	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.64E-6	354	386	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.9E-17	354	380	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-11	356	470	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.9E-17	444	481	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.55E-15	444	482	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	9.2E-4	562	611	No hit	No description
PROSITE profile	PS51671	8.719	563	627	IPR002912	ACT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008152	Biological Process	metabolic process
GO:0016597	Molecular Function	amino acid binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence Send to blast
MQLTRKGICQ AKLYYPKFSS YGFAALQTLV CIPLMDGVLE LGTTEKVEED IGLIQHAKSF 60 FVDHQDIHAK PALSEYSTSN PTSCTEQQLL QTQAIIHQMS VDPHGSNQEE EEEEEEEDDE 120 ADNDEDIDHD DADDDGDEVE VDSGSEAETG RYNAGISTQI IPPNLEAAEK AIPATEPSEL 180 MQLEMSEDIR LGSPDECSNN LDTELQVLAV CHNRDQYNQQ RRDDSYQTWN FLHDDPCDGF 240 PLSSATQIQD LSPEDAHYSE TVSTILQNNL SRWVDSNYMG YLPHPQQSSF SKWNSRRDHH 300 LNVICEGTPQ WLLKNILFNI PNLHCKYKDE NSPKSRDGEG GIRKGTPQEE LSANHVLAER 360 RRREKLNERF IILRSLVPFV TKKEPLHIGE EQFIVTDVYP LRARSAVPVP VGVPVAYWTG 420 TVRFILEPVR YEPMACHNSS FMETIAEMDK ASILGDTIEY VKQLRRRIQD LESRNKLMES 480 ERRFKATEIQ KPGKLEGQSV KKSGSSPQSS TVNHIFSSQN RVASSDKRKI RVLEGGKGTG 540 KPSKAVEAPS TNVEVSIIES DALLELQCPY RDGLLLKIMQ TLHELRLEIT SIQSSSANNT 600 FTAELRAKVK EIRGKRASIV EIQSSYGRLR IYVFHHNKSK DVIRYHAFIC KIFSQPSPSS 660 MNKKKPFPSF LSIVQP

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence Send to blast

MQLTRKGICQ AKLYYPKFSS YGFAALQTLV CIPLMDGVLE LGTTEKVEED IGLIQHAKSF  60
FVDHQDIHAK PALSEYSTSN PTSCTEQQLL QTQAIIHQMS VDPHGSNQEE EEEEEEEDDE  120
ADNDEDIDHD DADDDGDEVE VDSGSEAETG RYNAGISTQI IPPNLEAAEK AIPATEPSEL  180
MQLEMSEDIR LGSPDECSNN LDTELQVLAV CHNRDQYNQQ RRDDSYQTWN FLHDDPCDGF  240
PLSSATQIQD LSPEDAHYSE TVSTILQNNL SRWVDSNYMG YLPHPQQSSF SKWNSRRDHH  300
LNVICEGTPQ WLLKNILFNI PNLHCKYKDE NSPKSRDGEG GIRKGTPQEE LSANHVLAER  360
RRREKLNERF IILRSLVPFV TKKEPLHIGE EQFIVTDVYP LRARSAVPVP VGVPVAYWTG  420
TVRFILEPVR YEPMACHNSS FMETIAEMDK ASILGDTIEY VKQLRRRIQD LESRNKLMES  480
ERRFKATEIQ KPGKLEGQSV KKSGSSPQSS TVNHIFSSQN RVASSDKRKI RVLEGGKGTG  540
KPSKAVEAPS TNVEVSIIES DALLELQCPY RDGLLLKIMQ TLHELRLEIT SIQSSSANNT  600
FTAELRAKVK EIRGKRASIV EIQSSYGRLR IYVFHHNKSK DVIRYHAFIC KIFSQPSPSS  660
MNKKKPFPSF LSIVQP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	358	363	ERRRRE
2	359	364	RRRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008790987.1	0.0	basic helix-loop-helix protein A isoform X1
TrEMBL	A0A2H3XZE5	0.0	A0A2H3XZE5_PHODC; basic helix-loop-helix protein A isoform X1
STRING	XP_008790987.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8863	30	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	1e-19	bHLH family protein