PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s746551g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HD-ZIP
Protein Properties Length: 791aa    MW: 84897 Da    PI: 6.8588
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s746551g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.82.9e-21119174156
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        +++ +++t++q++eLe+lF+++++p++++r eL+++l+L+ rqVk+WFqNrR+++k
  PDK_30s746551g001 119 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLNLESRQVKFWFQNRRTQMK 174
                        688999***********************************************999 PP
2START183.89.7e-583275531206
                        HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
              START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                        ela++a++elvk+a+  ep+W  s     e +n+de+ + f++  +     + +ea r++g+v+ ++  lve+l+d + +W  +++    + 
  PDK_30s746551g001 327 ELALAAMDELVKMAQMFEPLWIPSLeggkETLNYDEYERVFPRCIGmkpagFVSEATRETGLVIINSSALVETLMDAA-RWADMFPcmiaRT 417
                        5899*********************9*9999**********998889*******************************.************* PP

                        EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEE CS
              START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghsk 163
                        +t+evissg      g+lqlm aelq+lsplvp Rd+ f+R+++q  +g w++vdvS+d  +++ +   + +++++lpSg+++++++ng+sk
  PDK_30s746551g001 418 TTTEVISSGmggtrnGTLQLMHAELQVLSPLVPiRDVNFLRFCKQIAEGAWAVVDVSIDGIRQNASaPTPNMKCRRLPSGCVVQDMPNGYSK 509
                        ***********************************************************9999987777889******************** PP

                        EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH.HHHHTXXXXXX CS
              START 164 vtwvehvdlkgrlphwllrslvksglaegakt.wvatlqrqcek 206
                        vtwveh++++++ +h+l+r+l++sgl  ga++ wvatlqrqce+
  PDK_30s746551g001 510 VTWVEHAEYDESAVHQLYRPLLRSGLGLGARRrWVATLQRQCEC 553
                        ******************************988*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.89E-21106176IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-22109178IPR009057Homeodomain-like
PROSITE profilePS5007118.074116176IPR001356Homeobox domain
SMARTSM003896.4E-19117180IPR001356Homeobox domain
CDDcd000862.66E-19119177No hitNo description
PfamPF000467.5E-19119174IPR001356Homeobox domain
PROSITE patternPS000270151174IPR017970Homeobox, conserved site
PROSITE profilePS5084837.1318556IPR002913START domain
SuperFamilySSF559614.67E-30321553No hitNo description
CDDcd088751.44E-126324552No hitNo description
PfamPF018522.6E-49327553IPR002913START domain
SMARTSM002341.7E-41327553IPR002913START domain
SuperFamilySSF559614.67E-13581783No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 791 aa     Download sequence    Send to blast
MSLGGLFDGG SGGARVGAAI PYGSPAMPAG AISQSRLVSP SLPKPLLSSP GLSLALQTNM  60
DGQGDRSLSS IVGGAAGGGG RDADTVGRYK EDENESRSGS DNLDGGSGDD IDQENPRKKK  120
RYHRHTPQQI QELEALFKEC PHPDEKQRLE LSRRLNLESR QVKFWFQNRR TQMKTQMERH  180
ENNILKQEND KLRAENLSIR DAMRNPICSN CGGPVVLGEV SLEEQHLRIE NARLKDELDR  240
VCALAGKFLG KPASALANPL PLPLPSSSLE LAIGTIAFAG LGSAAMTLPV VADFPTAVSS  300
PLGSVGTPVR TVGTLGGVER ERTMLLELAL AAMDELVKMA QMFEPLWIPS LEGGKETLNY  360
DEYERVFPRC IGMKPAGFVS EATRETGLVI INSSALVETL MDAARWADMF PCMIARTTTT  420
EVISSGMGGT RNGTLQLMHA ELQVLSPLVP IRDVNFLRFC KQIAEGAWAV VDVSIDGIRQ  480
NASAPTPNMK CRRLPSGCVV QDMPNGYSKV TWVEHAEYDE SAVHQLYRPL LRSGLGLGAR  540
RRWVATLQRQ CECLAILMAS SLPTRDHNTI TASGRRSMLK LAQRMTDNFC AGVCASSAHK  600
WSKLSVGSIG EDVRVMTRQS VDDPGEPPGV VLSAATSRLR SEWDILSNGG PMQEMAHIAK  660
GQDHGNAVSL LRASAVNANQ SSMLILQETC TDASGSMVVY APVDIPAMHV VMNGGDSAYV  720
ALLPSGFAIL PDGGGGGAQK KVGGSLLTVA FQILVNSQPT AKLTVESVET VNNLISCTVQ  780
KIKAALHCDP Q
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008799528.10.0homeobox-leucine zipper protein ROC5
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A2H3YJ620.0A0A2H3YJ62_PHODC; homeobox-leucine zipper protein ROC5
STRINGXP_008799528.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]