PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s746191g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | C3H | ||||||||
Protein Properties | Length: 255aa MW: 26933.5 Da PI: 8.9569 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.5 | 4.2e-07 | 20 | 43 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C+ f+ t C++G++C+F H PDK_30s746191g001 20 KPKPCMKFFSTSGCPFGESCHFLH 43 7789******************** PP | |||||||
2 | zf-CCCH | 33.8 | 5.6e-11 | 86 | 112 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC++f Ck+GdrC+FaHg+ PDK_30s746191g001 86 YKTKLCNRFNTAEGCKFGDRCHFAHGE 112 9************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-8 | 18 | 43 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.192 | 18 | 46 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.45E-6 | 20 | 45 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.16 | 20 | 45 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-5 | 20 | 43 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-16 | 85 | 118 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-4 | 85 | 112 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.493 | 85 | 113 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.2E-9 | 86 | 116 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.9E-8 | 86 | 112 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MVVIDDGKYV GQQSFSSAGK PKPCMKFFST SGCPFGESCH FLHYVPGGLS SLGLAPVISL 60 SAALASALQK KATCPVGDPS VMVNGYKTKL CNRFNTAEGC KFGDRCHFAH GEGELRSPNN 120 VSRGSKRPLP NGPTGTAPGF GNGGSYNFAN PTGYSGPPGI ISNLTAQGYV EANQPGVAGP 180 SIFSLITSWK HFKIGFGSDG AVPTSPREMD IGQKVQDFSP PSPKGKFQCI HDTENVLKKI 240 TKPEVASCDW MNHRA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026656954.1 | 1e-123 | zinc finger CCCH domain-containing protein 14-like isoform X1 | ||||
TrEMBL | A0A3Q0HR87 | 1e-122 | A0A3Q0HR87_PHODC; zinc finger CCCH domain-containing protein 14-like isoform X1 | ||||
STRING | XP_008777214.1 | 3e-96 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 3e-13 | C3H family protein |