PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s745991g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family M-type_MADS
Protein Properties Length: 265aa    MW: 29916.8 Da    PI: 4.1769
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s745991g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.49.2e-141059250
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-.EEEEEEE-TTSEEEEEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCda.evaviifsstgklyeys 50
                       +i ++ +rqv fskRr+g++KKA  ++    a  +a++ifs  g+l++++
  PDK_30s745991g001 10 KIPETQQRQVCFSKRRKGLFKKAADICAASRAcSIAIVIFSAVGNLFTFA 59
                       5778999********************9986548***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.4E-17161IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.5E-17172IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.026162IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-7323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-131058IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGRRKIAIEK IPETQQRQVC FSKRRKGLFK KAADICAASR ACSIAIVIFS AVGNLFTFAH  60
PGVEAISRRF LGNEALIDQL SNKEPENTHA AIGDDGNSCQ EESDDGFDVS DAESDCGDEA  120
IGDDGNSCQD ESDDGFDVSD GESDCGDDEE MMITDNDREE TVKQDVGREE EEKEAREEVM  180
RKDNNREETL KQEVGKEKEE KETREEAQEI LEGDQFWWNK PIDDLRLEGL LELEKSIMEL  240
RDKVRDRAGF LLAEKPLSLC SWNHK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008813667.21e-133agamous-like MADS-box protein AGL61
TrEMBLA0A2H3ZGZ61e-132A0A2H3ZGZ6_PHODC; agamous-like MADS-box protein AGL61
STRINGXP_008813667.11e-132(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP782923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-09AGAMOUS-like 29