PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PDK_30s745571g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 181aa MW: 20393.4 Da PI: 10.4357 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.2 | 1.6e-06 | 67 | 89 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H PDK_30s745571g001 67 YVCEICNQGFQRDQNLQMHRRRH 89 9*********************9 PP | |||||||
2 | zf-C2H2 | 16.3 | 2.8e-05 | 144 | 166 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+k + +s++k H++t+ PDK_30s745571g001 144 WVCARCSKAYAVQSDYKAHLKTC 166 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.27E-5 | 64 | 90 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.5E-6 | 66 | 89 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12874 | 0.0069 | 67 | 85 | No hit | No description |
SMART | SM00355 | 0.0052 | 67 | 89 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.97 | 67 | 89 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 69 | 89 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 210 | 108 | 138 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.5E-4 | 135 | 165 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 160 | 144 | 171 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 181 aa Download sequence Send to blast |
MIGSPSPAPP QPLSINTSSN SSIGPQPFPS LHGVNTGKKK RRPAGTPDPD AEVISLSPRT 60 LLESDRYVCE ICNQGFQRDQ NLQMHRRRHK VPWKLLKRDA AEVRKRVFVC PEPSCLHHDP 120 CHALGDLVGI KKHFRRKHSN HRQWVCARCS KAYAVQSDYK AHLKTCGTRG HSCDCGRVFS 180 R |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-13 | 141 | 181 | 4 | 44 | Zinc finger protein JACKDAW |
5b3h_F | 1e-13 | 141 | 181 | 4 | 44 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 37 | 41 | KKKRR |
2 | 37 | 42 | KKKRRP |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CT833680 | 1e-137 | CT833680.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA234B05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008789229.1 | 1e-133 | protein indeterminate-domain 16 | ||||
Swissprot | F4IPE3 | 1e-99 | IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5 | ||||
TrEMBL | A0A2H3XV52 | 1e-132 | A0A2H3XV52_PHODC; protein indeterminate-domain 16 | ||||
STRING | XP_008789229.1 | 1e-132 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1051 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G01940.1 | 1e-102 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
---|---|---|---|
|