PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s745071g005
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 432aa    MW: 48713.4 Da    PI: 7.7246
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s745071g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.98.3e-36461881128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....... 77 
                        lp+G++F+Ptd+el+ e+L++kv+g++      ++++   i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+       
  PDK_30s745071g005  46 LPAGVKFDPTDQELI-EHLEAKVKGEEsrshplIDEFIPtIEGEdGICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKiqtecdl 135
                        799************.99********97776553333333666646**********.555666799******************75555554 PP

                NAM  78 .tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                           + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  PDK_30s745071g005 136 qRGETRWHKTGKTRPVMV-NGRKKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 188
                        433788************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-3741207IPR003441NAC domain
PROSITE profilePS5100532.52446207IPR003441NAC domain
PfamPF023652.3E-1647188IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MNRSSIGSAS SSDLIDAKLE EHRMCGSKQC PSCGHKLDRK PDWVGLPAGV KFDPTDQELI  60
EHLEAKVKGE ESRSHPLIDE FIPTIEGEDG ICYTHPEKLP GVTRDGLSKH FFHRPSKAYT  120
TGTRKRRKIQ TECDLQRGET RWHKTGKTRP VMVNGRKKGC KKILVLYTNF GKHRKPEKTN  180
WVMHQYHLGE LEEEKEGELV VSKIFYQTQP RQCNWSDRSA AAAAGEGIMD QRRESGSGSC  240
SSKEVVSQRD ELNSRAGISG YTALDIQQNI KPDNFSFAPF RKSFDEVGMG GAGPKAREEH  300
EEAEHHHALP QHHHVAQKQQ QAAPTAAFHI SRPTNTVSTI ISPPPLHQTS VVLNDPYHVS  360
RLLLQADKFQ QQQQQQQLQQ HQKLDHRSAS GLEELIMGCT SAGIRGETSV PHSQETEWQY  420
PYWSPDNPDH HG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-124418813140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008794089.10.0NAC domain-containing protein 75-like isoform X1
RefseqXP_017699060.10.0NAC domain-containing protein 75-like isoform X1
RefseqXP_017699061.10.0NAC domain-containing protein 75-like isoform X1
SwissprotQ9M0F81e-162NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A2H3Y6A50.0A0A2H3Y6A5_PHODC; NAC domain-containing protein 75-like isoform X1
STRINGXP_008794089.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-139NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]