PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s744692g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 721aa MW: 82405 Da PI: 6.6766

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s744692g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.8	1.8e-23	95	180	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn+YA++ GFsvr+ + ++ ++g++ +r f Cs+eg+r+e++++ ++++r+ rt+C a+++ k ++d++w+v+k+ eHnH+l PDK_30s744692g001 95 FYNRYAHRKGFSVRMGHLGRR-KDGTVRNRVFLCSNEGSRQEHSTH--MTKKPREAVRTNCMARIEYKVSRDNVWVVSKIIFEHNHPLL 180 9**************9997.8888************9988..9999*********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-20	95	180	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.0E-30	305	399	IPR018289	MULE transposase domain
Pfam	PF04434	0.0011	574	614	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.198	574	621	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0049	596	625	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 721 aa Download sequence Send to blast
MDSSGSSSDN ESVETVEDSL SDKEKDDAEM DNMSQGPSTG ENVVQKISQA SKEGDSGSAV 60 VKYTNNIDKS KANGNSQLEP EVGMVFHSED QAYLFYNRYA HRKGFSVRMG HLGRRKDGTV 120 RNRVFLCSNE GSRQEHSTHM TKKPREAVRT NCMARIEYKV SRDNVWVVSK IIFEHNHPLL 180 RPHKAHLLRS HRKLLLAQRD GMPNAAEMGN DADNPAQALE FLVEEARDAE TVGFLLKDQS 240 SYLHTNRMRE LEKGDAQVLL EFLKAKQLED PSFFYAIQLD DREQVTNFFW ADARSILDFS 300 YFGDVVLFDT TYRTNKGEIP FAPFIGINHH KQIVVFGAAL LLDETTESFV WLFKTFMVAM 360 SGRQPKTIFT DHFPALSRAI SLTLPETCHR LCLWHILQNS AVHISHAYSS EPDFQKGFKN 420 CIYEGGSEED FHTRWVDLVN KYGLEGNAWL EDLYAIREKW ALVYHKNSFC ASMTTVKWSE 480 SMKNHFKKHF NRKLPLSKFL EQYQKSLVRF HEKELYEDYK SRQTKPVLLV DMPMLNEAAE 540 SYTRLVYNEF EDEIKSQLSC LCEQVGFDGT VDVYKVSLPE KHSYGIVEYN SSNFMVTCSC 600 KKFETTGILC MHALKESFTP SQGIFDHTMA TQAVRNPSIA WCTPRGSVGV PMPIMQGQSN 660 NFVGWMVQPR SVPNVSLSPH HLDEPMHSAL PGQHQPSSRK LNFDINKGFD LDRDRVDMGL 720 T

Sequence ? help Back to Top

Protein Sequence Length: 721 aa Download sequence Send to blast

MDSSGSSSDN ESVETVEDSL SDKEKDDAEM DNMSQGPSTG ENVVQKISQA SKEGDSGSAV  60
VKYTNNIDKS KANGNSQLEP EVGMVFHSED QAYLFYNRYA HRKGFSVRMG HLGRRKDGTV  120
RNRVFLCSNE GSRQEHSTHM TKKPREAVRT NCMARIEYKV SRDNVWVVSK IIFEHNHPLL  180
RPHKAHLLRS HRKLLLAQRD GMPNAAEMGN DADNPAQALE FLVEEARDAE TVGFLLKDQS  240
SYLHTNRMRE LEKGDAQVLL EFLKAKQLED PSFFYAIQLD DREQVTNFFW ADARSILDFS  300
YFGDVVLFDT TYRTNKGEIP FAPFIGINHH KQIVVFGAAL LLDETTESFV WLFKTFMVAM  360
SGRQPKTIFT DHFPALSRAI SLTLPETCHR LCLWHILQNS AVHISHAYSS EPDFQKGFKN  420
CIYEGGSEED FHTRWVDLVN KYGLEGNAWL EDLYAIREKW ALVYHKNSFC ASMTTVKWSE  480
SMKNHFKKHF NRKLPLSKFL EQYQKSLVRF HEKELYEDYK SRQTKPVLLV DMPMLNEAAE  540
SYTRLVYNEF EDEIKSQLSC LCEQVGFDGT VDVYKVSLPE KHSYGIVEYN SSNFMVTCSC  600
KKFETTGILC MHALKESFTP SQGIFDHTMA TQAVRNPSIA WCTPRGSVGV PMPIMQGQSN  660
NFVGWMVQPR SVPNVSLSPH HLDEPMHSAL PGQHQPSSRK LNFDINKGFD LDRDRVDMGL  720
T

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008809352.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_008809353.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_017701665.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A2H3Z7K1	0.0	A0A2H3Z7K1_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRING	XP_008809351.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-125	FAR1-related sequence 5