PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PDK_30s744271g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 160aa MW: 18495.2 Da PI: 9.771 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.1 | 1.4e-18 | 49 | 102 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+ q++ Le F k+r++ ++ +LA++lgL+ +qV vWFqNrRa++k PDK_30s744271g001 49 KKRRLTDAQVKFLEMSFGKERKLESGRKVHLASELGLDPKQVAVWFQNRRARHK 102 56689***********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 116.6 | 1.5e-37 | 49 | 131 | 2 | 84 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 kkrrl++ qvk+LE+sF +e+kLe+ rKv+la+eLgl+p+qvavWFqnrRAR+k+kq+E++y +Lk+a+da+ e+++Le+ev PDK_30s744271g001 49 KKRRLTDAQVKFLEMSFGKERKLESGRKVHLASELGLDPKQVAVWFQNRRARHKSKQIEQEYLKLKSAHDAIIVEKCHLENEV 131 9*******************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.163 | 44 | 104 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.3E-17 | 47 | 108 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.13E-17 | 48 | 107 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.48E-15 | 49 | 105 | No hit | No description |
Pfam | PF00046 | 4.9E-16 | 49 | 102 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-18 | 49 | 102 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.0E-5 | 75 | 84 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 79 | 102 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.0E-5 | 84 | 100 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 160 aa Download sequence Send to blast |
MTKAIPSQVE EELSYLMNFG ACSQRTEGET RTRRRRRKPK LDGAGEEAKK RRLTDAQVKF 60 LEMSFGKERK LESGRKVHLA SELGLDPKQV AVWFQNRRAR HKSKQIEQEY LKLKSAHDAI 120 IVEKCHLENE VCMHASLYHD TGAGLVSISE DPIMDRCHFR |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 33 | 51 | RRRRKPKLDGAGEEAKKRR |
2 | 35 | 51 | RRKPKLDGAGEEAKKRR |
3 | 96 | 104 | RRARHKSKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008795628.1 | 3e-91 | homeobox-leucine zipper protein HOX12-like | ||||
Swissprot | A2YN17 | 8e-40 | HOX14_ORYSI; Homeobox-leucine zipper protein HOX14 | ||||
Swissprot | Q7XI85 | 7e-40 | HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14 | ||||
TrEMBL | A0A2H3Y9T6 | 6e-90 | A0A2H3Y9T6_PHODC; homeobox-leucine zipper protein HOX12-like | ||||
STRING | XP_008795628.1 | 1e-90 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2006 | 38 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36740.1 | 2e-37 | homeobox protein 40 |
Publications ? help Back to Top | |||
---|---|---|---|
|