PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s742401g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 393aa    MW: 43495.5 Da    PI: 7.0413
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s742401g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-171461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g W++eEde+l++++++ G g+W+++++  g+ R++k+c++rw +yl
  PDK_30s742401g001 14 KGLWSPEEDEKLLKYITKNGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61
                       678*******************************************97 PP
2Myb_DNA-binding44.73.2e-1467110146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg ++++E++l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++
  PDK_30s742401g001  67 RGTFSQQEEDLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110
                        899*******************.*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-25764IPR009057Homeodomain-like
PROSITE profilePS5129425.391965IPR017930Myb domain
SuperFamilySSF466896.74E-2912108IPR009057Homeodomain-like
SMARTSM007171.2E-121363IPR001005SANT/Myb domain
PfamPF002491.6E-151461IPR001005SANT/Myb domain
CDDcd001673.92E-111761No hitNo description
Gene3DG3DSA:1.10.10.605.1E-2565117IPR009057Homeodomain-like
PROSITE profilePS5129419.92166116IPR017930Myb domain
SMARTSM007172.0E-1266114IPR001005SANT/Myb domain
PfamPF002494.1E-1367110IPR001005SANT/Myb domain
CDDcd001676.13E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MGRHSGSHKQ KLRKGLWSPE EDEKLLKYIT KNGHGCWSSV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQQEEDLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLWQRG  120
IDPNTHKQLA ETQGKNSVPN DLRLLTTTTT LGSPDPSIPK PAQSLMPAMD TLAAESSNPK  180
NSATATMEFF EDRFVASQES SSSCHPSDSP GYFLWFTQNS RLFDLNPEFN CDTISTLAPS  240
ASSSILSTSM VLKPALDPPP SSAGITGISY REAGNSSSSS GSRGTSSTVI ELQSSNSYFD  300
SAIFPWPDLT PDKDPQIQLP GQPEELKWSE YIHGAFPVSA DIQNQSQPLH GDIKTESHGL  360
NSCFHNQQAQ QQLQASDIFG KDFRRASVAF EQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28121165108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008775656.10.0transcription factor MYB61-like
TrEMBLA0A2H3ZHF20.0A0A2H3ZHF2_PHODC; transcription factor MYB61-like
STRINGXP_008775656.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23103794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.35e-82myb domain protein 55