PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s741891g011

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Nin-like

Protein Properties

Length: 919aa MW: 102082 Da PI: 6.3942

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s741891g011	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.2	3.3e-28	615	666	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sle+l++yF++++kdAAk +gvc+T+LKriCR++GI+RWP+Rkik++ PDK_30s741891g011 615 AEKTVSLEVLRHYFAGSLKDAAKRIGVCPTTLKRICRKHGISRWPSRKIKKV 666 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.279	605	686	IPR003035	RWP-RK domain
Pfam	PF02042	4.0E-24	618	666	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.66E-22	829	913	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.8E-24	830	913	No hit	No description
PROSITE profile	PS51745	25.856	833	916	IPR000270	PB1 domain
SMART	SM00666	1.3E-26	833	916	IPR000270	PB1 domain
Pfam	PF00564	1.2E-19	833	915	IPR000270	PB1 domain
CDD	cd06407	2.98E-38	834	914	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 919 aa Download sequence Send to blast
MEASSLPSRT LSDGAANLDL LDQLLSEEGW LEFPNSSDVL QTNTPSSMSP FDSLSFSPLF 60 EVSYSNSTPV LPESDNPEDT DRSAISTNPP SDESQVEKID RTHSLNSSTF GRIMYSVPSG 120 ELSTINPSPE PGTNWWIRPS SSISSVKERF MHALSYIKET HREGNVLVQL WVPMKRGDQL 180 VLTTYGQPFL VDPNCEKLVN YREISTNYQF SAEESSGQAL GLPGRVFLGG LPEWTPDVRC 240 FTSSEFLRVG YAQRLDVRGT IALPVFERGG RSCLGVVEVV TTTRNISYSS ELQNICNALQ 300 AVDLMSSEVL SVPHLKVSIS SYQAALPEIL EVLKTVCKIH KLPLAQTWIP CIQQGKTGSR 360 HSKENYEDCV STVDAACYVN NPSMLSFHRA CSEHHLLKGQ GVAGKAFTTN EPCFSPDIAA 420 SCKTEYPLSH HARMCNLKGA VAIRLRSIRT GNADFVLEFF LPLDCIGSEE QKLMLNSLSN 480 TIQQACQTLQ VVTIKELDDE AMLQLNESIP SELRFDRSGA EEGHRQNVDD VLSVEASEKE 540 TSRYLELEKH WVEGFTVTTH SNQPEVVLPA GEIFSEFKQH CQDLQKDANS HKDSFIDDSN 600 FPLSRKAIEK RRTKAEKTVS LEVLRHYFAG SLKDAAKRIG VCPTTLKRIC RKHGISRWPS 660 RKIKKVDHSL KKLQVVIDSV HGADKALQLS SLYKEFTKTS GPDGNLSRSI TFSPVNQKDL 720 PESTHRQEDA RFRLHLSSPS HSSSSCSQSS SSSHSSSSGA KQATQAAGFI IKPESSLEES 780 PSGIPERKNS QVDLSLPTQE ETLCPNRFED HKSIIGHCSS RTLSSLHMDT STWIRVKAMY 840 GAEKVRLRLQ PTWGFQDLKQ EITKRFDIGN TSSVNLKYLD EDTEWILLTC DADLQECIHV 900 YRSSGAATIK ISVQSVGLS

Sequence ? help Back to Top

Protein Sequence Length: 919 aa Download sequence Send to blast

MEASSLPSRT LSDGAANLDL LDQLLSEEGW LEFPNSSDVL QTNTPSSMSP FDSLSFSPLF  60
EVSYSNSTPV LPESDNPEDT DRSAISTNPP SDESQVEKID RTHSLNSSTF GRIMYSVPSG  120
ELSTINPSPE PGTNWWIRPS SSISSVKERF MHALSYIKET HREGNVLVQL WVPMKRGDQL  180
VLTTYGQPFL VDPNCEKLVN YREISTNYQF SAEESSGQAL GLPGRVFLGG LPEWTPDVRC  240
FTSSEFLRVG YAQRLDVRGT IALPVFERGG RSCLGVVEVV TTTRNISYSS ELQNICNALQ  300
AVDLMSSEVL SVPHLKVSIS SYQAALPEIL EVLKTVCKIH KLPLAQTWIP CIQQGKTGSR  360
HSKENYEDCV STVDAACYVN NPSMLSFHRA CSEHHLLKGQ GVAGKAFTTN EPCFSPDIAA  420
SCKTEYPLSH HARMCNLKGA VAIRLRSIRT GNADFVLEFF LPLDCIGSEE QKLMLNSLSN  480
TIQQACQTLQ VVTIKELDDE AMLQLNESIP SELRFDRSGA EEGHRQNVDD VLSVEASEKE  540
TSRYLELEKH WVEGFTVTTH SNQPEVVLPA GEIFSEFKQH CQDLQKDANS HKDSFIDDSN  600
FPLSRKAIEK RRTKAEKTVS LEVLRHYFAG SLKDAAKRIG VCPTTLKRIC RKHGISRWPS  660
RKIKKVDHSL KKLQVVIDSV HGADKALQLS SLYKEFTKTS GPDGNLSRSI TFSPVNQKDL  720
PESTHRQEDA RFRLHLSSPS HSSSSCSQSS SSSHSSSSGA KQATQAAGFI IKPESSLEES  780
PSGIPERKNS QVDLSLPTQE ETLCPNRFED HKSIIGHCSS RTLSSLHMDT STWIRVKAMY  840
GAEKVRLRLQ PTWGFQDLKQ EITKRFDIGN TSSVNLKYLD EDTEWILLTC DADLQECIHV  900
YRSSGAATIK ISVQSVGLS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026658046.1	0.0	protein NLP1-like
TrEMBL	A0A3Q0HU00	0.0	A0A3Q0HU00_PHODC; protein NLP1-like
STRING	XP_008781315.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5554	38	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein