PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s740011g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 314aa    MW: 34732.1 Da    PI: 7.5272
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s740011g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.46.1e-171461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd +lv +++++G g+W++++   g+ R+ k+c++rw +yl
  PDK_30s740011g001 14 KGPWTAEEDIILVSYIQEHGAGNWRAVPTNTGLLRCSKSCRLRWTNYL 61
                       79******************************99************97 PP
2Myb_DNA-binding46.11.1e-1467112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++T+ E+ +++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  PDK_30s740011g001  67 RGNFTPHEQGIIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                        89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.4E-23564IPR009057Homeodomain-like
PROSITE profilePS5129423.776965IPR017930Myb domain
SuperFamilySSF466894.12E-3011108IPR009057Homeodomain-like
SMARTSM007177.3E-141363IPR001005SANT/Myb domain
PfamPF002491.8E-151461IPR001005SANT/Myb domain
CDDcd001676.40E-111661No hitNo description
Gene3DG3DSA:1.10.10.605.8E-2465116IPR009057Homeodomain-like
SMARTSM007172.5E-1366114IPR001005SANT/Myb domain
PROSITE profilePS5129417.61866116IPR017930Myb domain
PfamPF002496.5E-1367112IPR001005SANT/Myb domain
CDDcd001672.67E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGRPPCCDKV GIKKGPWTAE EDIILVSYIQ EHGAGNWRAV PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TPHEQGIIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKFKKYQ  120
TAIDSSMISS DSGASCHEQM SKGYSMEGRI RIPGLTASHS PTSRFYQSPS TYTSNTENIS  180
RLLEGWMWSL PKSAQDMHQQ STIIDSDGNE SLQGSQAKGD RWSCAAIAKD DHDSLLSFEN  240
LSSIAWEKSS SSSLHSVLQG TQLAPADAEA KRGVADGAQQ PPLSLLEKWL LDDTSGLVDG  300
LMELPADCFS SPML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008790473.10.0myb-related protein 306-like isoform X1
SwissprotB3VTV71e-110MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A2H3XY870.0A0A2H3XY87_PHODC; myb-related protein 306-like isoform X1
STRINGXP_008790473.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.13e-94myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]