PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s738571g007

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

G2-like

Protein Properties

Length: 369aa MW: 41533.1 Da PI: 8.5679

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s738571g007	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	39.7	1.1e-12	27	52	1	26
G2-like 1 kprlrWtpeLHerFveaveqLGGsek 26 kprlrWtp+LH+rFv+av++LGG+ek PDK_30s738571g007 27 KPRLRWTPDLHDRFVDAVAKLGGPEK 52 79**********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-10	24	52	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.7E-8	27	52	IPR006447	Myb domain, plants
Pfam	PF14379	8.6E-25	107	154	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MERGYGSAYE AAAGGGGGGV VLSRDPKPRL RWTPDLHDRF VDAVAKLGGP EKFWAVDHGH 60 MPKESQESYK LTFRWKALRD NLLTTKCFSK LRLEVINSIE ASFGNEMPLA EALRYQIEVQ 120 RKLHEQLEVQ KKLQMRIEAQ GKYLQAILEK AQKSLSFDMN NSGSLEATRA QLTDFNLALS 180 GLMDNVNQVC EEKNEDLGKF ISQDNLKRTQ NSGFQLYQKQ QEDREDIKLA PNGENHVFPH 240 HYNLITFSTP VQLCLRESES WYGSRLLILA IVGCSRNSQV STTMGARVHD QSCPSTSTGS 300 ENLQLASTWP IRLQPKQNSG KRFRARMTEL ASPFPSECLL RAGRTSPLNP LSRFDLPFLP 360 GFPSPAQSD

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MERGYGSAYE AAAGGGGGGV VLSRDPKPRL RWTPDLHDRF VDAVAKLGGP EKFWAVDHGH  60
MPKESQESYK LTFRWKALRD NLLTTKCFSK LRLEVINSIE ASFGNEMPLA EALRYQIEVQ  120
RKLHEQLEVQ KKLQMRIEAQ GKYLQAILEK AQKSLSFDMN NSGSLEATRA QLTDFNLALS  180
GLMDNVNQVC EEKNEDLGKF ISQDNLKRTQ NSGFQLYQKQ QEDREDIKLA PNGENHVFPH  240
HYNLITFSTP VQLCLRESES WYGSRLLILA IVGCSRNSQV STTMGARVHD QSCPSTSTGS  300
ENLQLASTWP IRLQPKQNSG KRFRARMTEL ASPFPSECLL RAGRTSPLNP LSRFDLPFLP  360
GFPSPAQSD

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN375330	8e-78	JN375330.1 Phoenix dactylifera mitochondrion, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008800016.1	1e-111	myb family transcription factor PHL11
TrEMBL	A0A2H3YKB2	1e-110	A0A2H3YKB2_PHODC; myb family transcription factor PHL11
STRING	XP_008800016.1	1e-111	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3940	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	6e-38	G2-like family protein