PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PDK_30s738451g003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 454aa MW: 50230.5 Da PI: 8.4521 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.8 | 3.6e-19 | 329 | 362 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk + PDK_30s738451g003 329 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 362 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 4.18E-13 | 323 | 366 | No hit | No description |
SMART | SM00401 | 3.6E-21 | 323 | 374 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.466 | 327 | 359 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.0E-15 | 327 | 363 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.49E-14 | 328 | 378 | No hit | No description |
Pfam | PF00320 | 7.0E-17 | 329 | 362 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 329 | 354 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 454 aa Download sequence Send to blast |
MAVANSRSGP AQDDERELGK GSPSAVEEGP SVLKILVWIA GCARVWERID RALATASWIQ 60 QFSTYQVHNL PQIAFDHCPL LISTASDPNH HNMFRFEKLW ISYLQSWDSA RGAWGVLVQR 120 MLCGGFPINW SSPSGGCSDG TERWWAISSG AWTSWEPPLT SFVKVNFNGC MMDGGKRGEG 180 DQDQSHLTPF TLASAPSSCS CPILLNTSQE RGGNNGDHHL LQQEPKEHLF ISKSSDRQVT 240 FPTDCNNNNN TNEESSHDRC VSQEDLHGPS NWMSSKMRFM RKMMNSDHVS KPRRNMQALQ 300 DQVRANQDRS TSSSSSSSSY SPSGIIRVCS DCNTTKTPLW RSGPRGPKSL CNACGIRQRK 360 ARRAMDTAAA SGGIIPREAP SKMRKEKNSD VDRTLPFKKR CKIATTATAT QKNLCFDDVL 420 ISLGNSSAVH RVFPQDERDA ALLLMALSWG IICS |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008780491.2 | 1e-173 | protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like, partial | ||||
TrEMBL | A0A2H3X9Q8 | 1e-171 | A0A2H3X9Q8_PHODC; protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1893 | 38 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G26150.1 | 7e-28 | cytokinin-responsive gata factor 1 |