PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s737991g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 494aa    MW: 54823.8 Da    PI: 9.9255
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s737991g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.3e-09379427348
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                        +WT  E ++lvd+v+++G g+W+ I r        Rt  ++k++w+++l
  PDK_30s737991g003 379 AWTLGEVLKLVDGVARYGAGRWSEIRRLAFasySYRTSVDLKDKWRNLL 427
                        7***************************999**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.139372431IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-13374435IPR009057Homeodomain-like
SMARTSM007171.4E-8376429IPR001005SANT/Myb domain
SuperFamilySSF466893.51E-16378437IPR009057Homeodomain-like
CDDcd116601.05E-17378428No hitNo description
PfamPF002491.3E-6379427IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MLQKVKQEER LRLSSESLIH SAKCMDVKCQ TSDSCNETQA CNDKLQPENT SMETAPSSMV  60
LNGSCSALLR SAEACLGPAN EVVTSMSSVS ECTSSKPDFS ILKGEICLDN LSIRELQEAF  120
RATFGRQTSV KDKLWLKRRI TMGLTNSCDV PTTSFVIKDN KVVHKEMKEE PSRLQKSQTE  180
AGSMSTDQVT DATINNSQTL PSSPTDRTED LQVSGKRLRK PFCEYDEKNE NLQMEQFAGK  240
RSSPKSRIRP VRDIGSQGVS FSTRQDSLGG FGIQVPYVSR VRRGRPRKNF ATLMKYHPSG  300
IASNRVKQAP RIPAMQQNSE IGSRNFVDER GKRDAETINS DEEQDLRLEK FDAAGDNTDN  360
NADTRPPLTG GVRRKHHRAW TLGEVLKLVD GVARYGAGRW SEIRRLAFAS YSYRTSVDLK  420
DKWRNLLRAS LAQGPTDRGA KNSRKHTSIP IPAAILSRVR ELAEMQSQTG IELGPSKITG  480
RGGGIVQEKG SGFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1281287RRGRPRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1401410.0KC140141.1 Cocos nucifera Myb-like transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026658860.10.0uncharacterized protein LOC103703273 isoform X6
TrEMBLA0A3Q0HZQ50.0A0A3Q0HZQ5_PHODC; uncharacterized protein LOC103703273 isoform X6
STRINGXP_008784279.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69663341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.15e-92TRF-like 6